| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3882 |
|---|
| Symbol | |
|---|
| ID | 3520303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 4052726 |
|---|
| End bp | 4055176 |
|---|
| Gene Length | 2451 bp |
|---|
| Protein Length | 816 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637286328 |
|---|
| Product | leucine-rich repeat-containing protein |
|---|
| Protein accession | YP_270544 |
|---|
| Protein GI | 71279842 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCAATTC ATTTCTCCAT TTTCAAAACA TTACTATTCT CATTTTTAGT CATCACTCTT
ACTGCTTGTG GTGGAAGTGG TGAAGAAAGC CCCGAAGCTA ACCAGGTAGA AGTCATTCCT
CCAGTAACGC TACCATCAGT TAACGAAGTG CCCGTTATTA CCTTAAATGA CGAGTACTCA
GTCATCGAAT ATAGTGACAT TACTGTTAGT GCTTTAGCTG AGGACAGTGA TGGTGAAATT
ATCAGTTATC TATGGCAACA GAAATCAGGG CTTATCGTTG ACTTAAGCGA AACAGATTCA
AGTACATTAA CCTTCACCGC CCCTAATGTG AGTGAAGACC AGCAACTCAC TTTTGAGCTG
ACAGTTACTG ATGACGACAA CGCACTTACT ACTAAAAATA TAATCATTCG CTTGCATGCC
CTAGAAAGTG ATATTGAAGA CATAGTTTTT GCAAATGAGA ACTTCAAAAG CTGTATTTTT
AATATAGCTA AGGAAGCAAA TTTGCATAAA TCGGTAAATT TTAGACAAAT TGACTGTCGT
GATCAAAATA TCTCGTCAAC ACAAGGTTTG GAAAACTTTA CTGAACTAAA GACATTAACA
CTTATCAATA CTCAGATAAA AACTATAGAT TTGAGTGCTT TAATACGGTT GGAAACTATT
TGGCTTAGCC GTAATCAATT GTCTGAAATA GACTTGAGCA AGCAAACTTT ATTAACAGAT
CTAGAGCTCC ATGATAATAA TTTAGCCAGC ATAAACTTAG TGAATCAAGT CTTATTAACT
TATTTGTCTA TAACAAATAA CCAAATAATT TCAATAGATT TAGCAGCTCA AACACAACTA
ACTAATCTTG CTTTAGATGG TAACCAACTA CCAGAAGTTA ATTTAAGTGC ACAAAAACTA
TTAACTCATT TATATTTATC CAATAACCAA CTGACAAAAG TCGACTTAAG TAAACAAAAA
TTGTTAACTG ATTTAGCTTT ATCCGACAAT CAACTGACAA AAGTCGACTT AAGTGAACAA
AAATTGTTAA CTAATTTAGC TTTATCCAAC AATCAACTAA CAGAAGTCGA TTTAAGTACT
AAACCATTGT TAACTCACTT ACGTTTGAAT GATAACCCGA TAACAGACAT AGATTTACGT
GCCCAAAGAT TGCTAATTCT TTTAGGTTTA TCCAATAACC TACTCACAGA AGTCGATTTA
CGTGTCCAAG AACTTTTAAT TGATTTAGAT TTATCCAATA ACCTACTCAC AGAAGTCAAT
TTACGTGTCC AAGAACTTTT AATTGATTTA GATTTATCCA ATAACCTACT CACAGGAGTC
GATTTACGTG TCCAAGAACT TTTAATTGGT TTAGATTTAT CCAATAATCG ATTAACAGAA
GTCGACTTGA GTACTCAAAC ATTTTTAACA GGGCTCAATT TGGATGATAA CCAACTAACT
AAGATAGATT TAAAGAATCA AACAAAACTA CAATCTTTTT CAATAGACAA TAACCAAATT
ACTGAGCTTG ATTTATCTTC ACAGCCTGAA CTCAGCCGTA TTTCTATTTG GAATAATTAT
CTCACAGCCA TTAACCTTAG CACCCCATTA AAAATAACAG ATTTAGACCT TACAGAGTCT
AAGCTCACAA CTATCGATTT AACTGCCCAA CCACAATTAA AAAATTTAAT CTTATGGAAT
AATGAACTGA CAAGTATAGA TTTAAGTAAC CTAGTACAAC TAGAAAGCTT AAATTTAGGC
TCGAATGATA ATCTATCTGA AGTTAACTTA GCCGGGTTAA CAGGTTTGTC TAATTTAAGA
TTGAGTAATC TAAATCTATC AACTATCGAC CTTAGTCAAC AAAGCAACTT GCTTTCTTTA
CACATAGATG GCAATCCACT AACAACCCTT GATTTAAGTG CGCAAAAAAA ATTACATACT
TTATCAATAA GTAAGGGTAA CTTAGAAAAC TTTAACTTAA CAAATCTTAC CAAGTTAACT
TCCTTCGCTT CTTATAATAT TGAACCTGAA ACCATACAAC TTTTTCCTGA CTTAAAATTA
GATTATTTAG CTTTTAATTA CTTCCAAGCA AAATACATTA ATTTAACCGC ACATACTGAG
CTAACGACGT TAGTAATTAA TGAAGGGGGG ATAACTGACA TTGATTTAAG TGCCCATGAA
AAGATCGAAA ATTTACAGCT AACCGCTAAT CCATTAACAC TAATCAACTT AGACTCACAA
AATCTATTAA AATCTTTAAC TTTGGGAGGT AGCCAAATAA AAGAAATAAA CCTAAGTAAT
AAAAAGTACC TAAGGTCAAT ACAGCTTACA AGTAATAAAA TAAGCCAAAT AGACTTAACG
GGGCTAGATG CACTAGAGTA CCTTCGCCTG ACTGATAATC CATTAACGAA TGTCACCAAG
GATTATTTAG ATAGTTTAAA TGGAATTAAT GGTCTAAAAA TTTATTATTA A
|
|---|
| Protein sequence | MSIHFSIFKT LLFSFLVITL TACGGSGEES PEANQVEVIP PVTLPSVNEV PVITLNDEYS
VIEYSDITVS ALAEDSDGEI ISYLWQQKSG LIVDLSETDS STLTFTAPNV SEDQQLTFEL
TVTDDDNALT TKNIIIRLHA LESDIEDIVF ANENFKSCIF NIAKEANLHK SVNFRQIDCR
DQNISSTQGL ENFTELKTLT LINTQIKTID LSALIRLETI WLSRNQLSEI DLSKQTLLTD
LELHDNNLAS INLVNQVLLT YLSITNNQII SIDLAAQTQL TNLALDGNQL PEVNLSAQKL
LTHLYLSNNQ LTKVDLSKQK LLTDLALSDN QLTKVDLSEQ KLLTNLALSN NQLTEVDLST
KPLLTHLRLN DNPITDIDLR AQRLLILLGL SNNLLTEVDL RVQELLIDLD LSNNLLTEVN
LRVQELLIDL DLSNNLLTGV DLRVQELLIG LDLSNNRLTE VDLSTQTFLT GLNLDDNQLT
KIDLKNQTKL QSFSIDNNQI TELDLSSQPE LSRISIWNNY LTAINLSTPL KITDLDLTES
KLTTIDLTAQ PQLKNLILWN NELTSIDLSN LVQLESLNLG SNDNLSEVNL AGLTGLSNLR
LSNLNLSTID LSQQSNLLSL HIDGNPLTTL DLSAQKKLHT LSISKGNLEN FNLTNLTKLT
SFASYNIEPE TIQLFPDLKL DYLAFNYFQA KYINLTAHTE LTTLVINEGG ITDIDLSAHE
KIENLQLTAN PLTLINLDSQ NLLKSLTLGG SQIKEINLSN KKYLRSIQLT SNKISQIDLT
GLDALEYLRL TDNPLTNVTK DYLDSLNGIN GLKIYY
|
|---|
| |