Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3846 |
Symbol | gcvP2 |
ID | 3522032 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 4013294 |
End bp | 4016164 |
Gene Length | 2871 bp |
Protein Length | 956 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637286292 |
Product | glycine dehydrogenase |
Protein accession | YP_270508 |
Protein GI | 71281560 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTAACA ATAATTTATT AGCACAACTG AATGATAACT TAGATTTTAT CAGTCGACAT AATGGCCCTG ATCGAACCCA ACAACAGCAT ATGTTAGACA CGCTGAAAGT AGACTCTATC GAACAAATGA TCGATAAAAC AGTACCCGAT AATATTCGCC TTTTGCAGCC AATGGCATTA GCAAAACCGC AAAGCGAAAT TGAAATGTTA GCTACACTCA AAGGTATAGC GTCAAAAAAC AAAGTAAACA GAAGTTATAT TGGACAAGGG TATTATGATA CCCATGTCCC TCACGTTATT TTACGTAATG TCTTCGAAAA CCCTGGCTGG TATACCGCTT ATACGCCTTA TCAGCCAGAA ATTTCACAAG GTCGTTTAGA AGCACTGCTT AATTTTCAAC AAATGATCAC AGATCTTACC GCAATGGAAT TATCCAATGC GTCTTTGCTA GATGAAGCCA CTGCAGCTGC AGAAGCAATG AGCTTATGTA AGCGTGCCAG TAAAAATAAA AGTAATGTCT TTTTTGTTAG TGACGATGTT CACCCGCAAA CATTAGACGT CATCAATACC CGAGCAAAGT ATTTCTCTTT TGAGGTTGTG GTAGCCCCCT GCTCAGAACT AGAAAATCAT GATGTGTTTG GCGCTTTGTT GCAATATCCC GGCACAACAG GACAAGTACA TAATTTAGAA AAAATCATAG AACAAGCCCA TAGCAAAAAA ACCTTAGTTG CAGTTGCCGC TGACTTACTG GCGTTAACCG TACTTAAAGC CCCTGGCGAA ATGGGCGCGG ATGTTGTTAT AGGTAGTGCT CAACGCTTTG GCGTTCCAAT GGGTTACGGT GGTCCACATG CTGCATTCAT GGCCACTAAA GAAAAGTATA AACGTACCAT CCCTGGTCGA GTTATTGGTG TTTCAATTGA CTCAAAGGGT AAACCTGCTT TACGTATGGC GATGCAAACT CGAGAACAAC ATATTAGGCG AGAAAAAGCC AATTCGAATA TTTGTACCGC GCAAGCATTA CTTGCCAATA TGGCATCATT TTATGCCGTA TATCATGGCC CGCAAGGGTT GCGAAAAATG GGTCGACGCG TGAATCGTTT AACATCAGTG CTCGCTGCAG GTTTGCAAAA AGCAGGTATT GAACTGGTCC ATAATGATTT CTTCGATACG ATTACCCTAC AAACAAATGA AAAAACTGAT GCTATTTATC AACGCGCATT AGCTGCAGAC CTTAATTTGC GCTTATTACC TGATCAACTT GGTATCAGTT TAGATGAAAC CACAACGTCT GCTGACGTTG AAGCATTATG GTTAGCCATT ACTGAACAAT CTTTTAACGT CGATGATATT GAACAAACAC TAAGTGCAGA GTTTTGTAAC ATACCTGCAG ATTGTCAGCG TACTAGTGAG TATTTAAGTC ACCCAGTGTT TAATAGTTAT CACAGTGAAA CACGTATGTT GCGTTATTTA AAAAGTCTTG AAAATAAAGA CTTTTCATTA ACTCACGGCA TGATACCGCT GGGCTCTTGT ACAATGAAAC TCAATGCTAC CGCGCAAATG ATCCCTGTTA CCTGGCCTGA ATTTTCACGC ATGCACCCTT TTGCACCAAG CGATCAATGT ACAGGATATG AAACCTTAGC TGAAAGCTTT AGCGACATGC TAATAGAAAT CACTGGATAT GACGCTTTTT CATTACAGCC AAACTCTGGT GCGCAAGGTG AATATGCCGG ACTTATCGCC ATTCAACGTT ACCACGCCTC TCGCGGTGAA GATTATCGAA ATATCTGCTT AATTCCTAGC TCTGCACACG GTACTAACCC TGCCAGTGCT TCCATGGTAT CAATGCGTAT TGTGCTGGTT AATTGTGATA AAGAAGGCAA TGTTGACCTA GATGATTTGA AGGAAAAAAT AAACCTTCAT CGTGATCAAC TCTCTGCAAT GATGATCACT TATCCTTCAA CACATGGCGT TTATGAAGAA AGCATCAAAG AAATTTGCGA GCTTATTCAC GAAGCTGGTG GTCAAGTTTA TCTTGATGGT GCCAATATGA ATGCTCAAGT AGGGTTAACT TCGCCTGGTT TCATTGGCGC TGATGTCTCT CATCTCAACC TACATAAAAC ATTTTGTATT CCGCACGGCG GCGGTGGCCC AGGTATGGGA CCTATAGGTG TTAAATCACA CTTAGCCGAC TTTTTGCCAG GGCACAGTGT TACTAATACA GTAGGCGCAG TATCAGCAAC CGCACTAGGT AGTGCTTCTA TTTTACCTAT TTCTTGGGCC TACATTGCTT TAATGGGCGC TGAAGGACTA AAATCAGCCA CTGAGCTCGC TATTTTAAAT GCTAACTACA TTATGGAAAA ACTCAGCCCG CACTACCCTA TATTATTCAG AGGTAAGCAA GGACGTGTTG CTCATGAATG TATTATTGAC CTCAGACCAT TGAAAGAGTC TTCCGGTATC AGTGAAGAAG ATGTTGCGAA ACGTTTAATG GATTTTGGCT TTCATGCACC AACCATGTCA TTTCCTGTCG CTGGCACCTT GATGATTGAA CCAACTGAGA GTGAGTCTTT AGAAGAATTA GATAAATTTA TTGATGCACT GATTACGATT CGCCATGAAA TAGCGAAAGT TGAAGAGGGA ACTTGGACAC TTGCCGATAA CCCACTAGTC AATGCACCTC ACACATTAAA CGATCTGACC GGTAGTGACT GGCCTCGTGC TTATTCACGC TTAACCGCTT GTTATCCGAG TAGTTGTCCG AGCCAACCAA AATTTTGGCC AACAACTAAC CGTATTGACA ATGTCTACGG GGATCGAAAC CTAATTTGTA GCTGTCCTCC GATTGAGAGC TACCAATCAA CTGATACATA A
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Protein sequence | MTNNNLLAQL NDNLDFISRH NGPDRTQQQH MLDTLKVDSI EQMIDKTVPD NIRLLQPMAL AKPQSEIEML ATLKGIASKN KVNRSYIGQG YYDTHVPHVI LRNVFENPGW YTAYTPYQPE ISQGRLEALL NFQQMITDLT AMELSNASLL DEATAAAEAM SLCKRASKNK SNVFFVSDDV HPQTLDVINT RAKYFSFEVV VAPCSELENH DVFGALLQYP GTTGQVHNLE KIIEQAHSKK TLVAVAADLL ALTVLKAPGE MGADVVIGSA QRFGVPMGYG GPHAAFMATK EKYKRTIPGR VIGVSIDSKG KPALRMAMQT REQHIRREKA NSNICTAQAL LANMASFYAV YHGPQGLRKM GRRVNRLTSV LAAGLQKAGI ELVHNDFFDT ITLQTNEKTD AIYQRALAAD LNLRLLPDQL GISLDETTTS ADVEALWLAI TEQSFNVDDI EQTLSAEFCN IPADCQRTSE YLSHPVFNSY HSETRMLRYL KSLENKDFSL THGMIPLGSC TMKLNATAQM IPVTWPEFSR MHPFAPSDQC TGYETLAESF SDMLIEITGY DAFSLQPNSG AQGEYAGLIA IQRYHASRGE DYRNICLIPS SAHGTNPASA SMVSMRIVLV NCDKEGNVDL DDLKEKINLH RDQLSAMMIT YPSTHGVYEE SIKEICELIH EAGGQVYLDG ANMNAQVGLT SPGFIGADVS HLNLHKTFCI PHGGGGPGMG PIGVKSHLAD FLPGHSVTNT VGAVSATALG SASILPISWA YIALMGAEGL KSATELAILN ANYIMEKLSP HYPILFRGKQ GRVAHECIID LRPLKESSGI SEEDVAKRLM DFGFHAPTMS FPVAGTLMIE PTESESLEEL DKFIDALITI RHEIAKVEEG TWTLADNPLV NAPHTLNDLT GSDWPRAYSR LTACYPSSCP SQPKFWPTTN RIDNVYGDRN LICSCPPIES YQSTDT
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