Gene CPS_3779 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_3779 
SymbolsapF 
ID3518480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp3942979 
End bp3943755 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content38% 
IMG OID637286226 
Productpeptide ABC transporter, ATP-binding protein 
Protein accessionYP_270446 
Protein GI71278730 
COG category[V] Defense mechanisms 
COG ID[COG4167] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGTTT TATTAGACGT TAAGGACATA GCAAAATCAT ACAAACTCAA AGGACACTGG 
TACCATAAAC GTAAGTTTAA TGCCCTGTCA CCGTTATCTT TTGCCATTGA AGCAAAGAAG
ACCCTAGCAA TTGTTGGCGA AACAGGCTCA GGTAAGTCAA CTTTGGCAAA AATATTAGTC
GGTGCAGAAA CGCCCAGCAC AGGGAAAATA TATTTAAATG GCCAGTTGTT ACAGAACCAG
CATTTTAAAC AAAGATGCCA GCATATTAGG ATGATATTCC AAGATTCTGG CACGACCTTG
AACCCTAGTT TAACCATTCA AGAGTTACTC GATGAGCCAT TAATACTTAA TACGGTATTA
AATGAAAAAC AGCGTAAACA GCTTATCCGT ACTACCCTAC AAAAAGTTGG CCTGCTGGGA
GATCACATGA ATTTTTATCC TCATATGTTC TCTGGTGGCC AGAAGCAAAG AATATCACTA
GCTAGAGCAA TTATATTGCA ACCTCAGGTT ATCATCCTAG ATGAAGCTTT AGCAGCGTTA
GACCCTTCAT TACGTTCGCA AATGATTAAC TTATTACTCG ACTTGCAACA GCAGATGGGA
TTAGCGTATA TATTGATTTC TCACAACTTA GGCATTGTTC GTCACTTTAG TGATGATGTA
ATGATAATGT CGCAAGGTGA GGTAGTTGAA TCAGGAAAAA CCATTGAGGT AATGCGTAAC
CCTCAGCATA AAGTGACTCA GAAATTAATG ATGAGCCAGA ACTTTAAGTT AAAATAA
 
Protein sequence
MSVLLDVKDI AKSYKLKGHW YHKRKFNALS PLSFAIEAKK TLAIVGETGS GKSTLAKILV 
GAETPSTGKI YLNGQLLQNQ HFKQRCQHIR MIFQDSGTTL NPSLTIQELL DEPLILNTVL
NEKQRKQLIR TTLQKVGLLG DHMNFYPHMF SGGQKQRISL ARAIILQPQV IILDEALAAL
DPSLRSQMIN LLLDLQQQMG LAYILISHNL GIVRHFSDDV MIMSQGEVVE SGKTIEVMRN
PQHKVTQKLM MSQNFKLK