Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3779 |
Symbol | sapF |
ID | 3518480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 3942979 |
End bp | 3943755 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637286226 |
Product | peptide ABC transporter, ATP-binding protein |
Protein accession | YP_270446 |
Protein GI | 71278730 |
COG category | [V] Defense mechanisms |
COG ID | [COG4167] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGTTT TATTAGACGT TAAGGACATA GCAAAATCAT ACAAACTCAA AGGACACTGG TACCATAAAC GTAAGTTTAA TGCCCTGTCA CCGTTATCTT TTGCCATTGA AGCAAAGAAG ACCCTAGCAA TTGTTGGCGA AACAGGCTCA GGTAAGTCAA CTTTGGCAAA AATATTAGTC GGTGCAGAAA CGCCCAGCAC AGGGAAAATA TATTTAAATG GCCAGTTGTT ACAGAACCAG CATTTTAAAC AAAGATGCCA GCATATTAGG ATGATATTCC AAGATTCTGG CACGACCTTG AACCCTAGTT TAACCATTCA AGAGTTACTC GATGAGCCAT TAATACTTAA TACGGTATTA AATGAAAAAC AGCGTAAACA GCTTATCCGT ACTACCCTAC AAAAAGTTGG CCTGCTGGGA GATCACATGA ATTTTTATCC TCATATGTTC TCTGGTGGCC AGAAGCAAAG AATATCACTA GCTAGAGCAA TTATATTGCA ACCTCAGGTT ATCATCCTAG ATGAAGCTTT AGCAGCGTTA GACCCTTCAT TACGTTCGCA AATGATTAAC TTATTACTCG ACTTGCAACA GCAGATGGGA TTAGCGTATA TATTGATTTC TCACAACTTA GGCATTGTTC GTCACTTTAG TGATGATGTA ATGATAATGT CGCAAGGTGA GGTAGTTGAA TCAGGAAAAA CCATTGAGGT AATGCGTAAC CCTCAGCATA AAGTGACTCA GAAATTAATG ATGAGCCAGA ACTTTAAGTT AAAATAA
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Protein sequence | MSVLLDVKDI AKSYKLKGHW YHKRKFNALS PLSFAIEAKK TLAIVGETGS GKSTLAKILV GAETPSTGKI YLNGQLLQNQ HFKQRCQHIR MIFQDSGTTL NPSLTIQELL DEPLILNTVL NEKQRKQLIR TTLQKVGLLG DHMNFYPHMF SGGQKQRISL ARAIILQPQV IILDEALAAL DPSLRSQMIN LLLDLQQQMG LAYILISHNL GIVRHFSDDV MIMSQGEVVE SGKTIEVMRN PQHKVTQKLM MSQNFKLK
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