Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3708 |
Symbol | |
ID | 3521262 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 3857980 |
End bp | 3859308 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637286155 |
Product | sugar:cation symporter family protein |
Protein accession | YP_270375 |
Protein GI | 71280793 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2211] Na+/melibiose symporter and related transporters |
TIGRFAM ID | [TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTAGTG TAAGAGAAAA AATTGCTTAT GGTTTAGGTG ATACTGCCAG TAATATAATC TTTCAAACGG TAATGATGTT CTTATTACTG TTTTACACTG ACGTTGTTGG TTTATCTCCT GCTGTGGTTG GTACTATGTT TTTATTCGTA CGACTAATCG ATGCGGTTAC CGATCCAATC ATGGGCAACT TAGCCGATAA AACCCGCACT AAGTGGGGAC AGTTCCGTCC TTATCTGCTG TGGTTAGCGC TACCTTTTGC TTTGATCAGT ATATTAGCTT TCACCACACC CGACTTAACC GGTAATAATA AAGTTATCTA TGCTTTTGTC ACTTATACCC TTCTTATGAT TGCTTATACG GCAATCAATA TTCCTTATTG TGGTTTAGGT GGTGTTATTA CTGCTGATGC AAAAGAGCGA GTCACGGTAC AATCATATCG TTTTGTATTT GGTATGTTAG GCGGCGTCAT TGTTGCAGGC GCAACTATGC CAATGGTGGA ATGGTTTGGC CAAGGCGATA CTGCAAAAGG CTACCAATAT ACAATGGTCG CAATGAGCAG CTTAGGCGTC GTCTTGTTTT TGTTATGTTT CTTAGGAACA AAAGAACGAG TAAAACCACC AGAAAACCAA GACTCATCGA TGAAAGAAAA TCTGCAATCA TTATGGAAGA ATGACCAATG GCGCATATTA TGTATTGCTT CTTTTTATTT ACTCACGGGG CAAGTTTTAC GCCTTACCCT TGCTGTTTAT TATGTTAAGT ACTTTCTCGG GCGCGAAGAT TTAATCACGT CATTTTTAAC ACTAGGCGTA GTGGCAAGTA TGATAGGTTG CGCGGTAGCA CAGCCGCTCG CTAAACGTGT ATGTAAAATA AAAGCCTATA TAGCACTGCA AAGTTTATCC GCAGTTATAT GCCTAGCGAG TTTTCTTATT TCCCCCAACC AAATTATTCT TGCGTTTGTC GCCTTTATTT CTTGGAAGTT TTTTCTTGAT ATGGCTTCAC CACTACTGTG GGCAAAAATG GCAGATACCA TTGACTATGG TCATAAAAAA ACAGGTATTA GGGTAACAGG CCTTGTTTAT TCTGGCGTAA TATTTTTTAT CAAAATGGGT ATTGCTATTG GTGGTGCACT TGCTGGATGG TTATTAACTT TTTACGGTTA CCAAGCTGAT TTAGAACAGA GTGAGGCTAC CAAGCAAGGT TTATTATTAT CATTTACCGT TTTACCTGCA TTAGGTTCAT TTGCTGTAGC TTGGGTAATG CGAAAATATA CCTTAACCGA ACAAAGAGTC GTTCAAATAC AGGTAGAATT AAGCACGGAG ACTAAGTAA
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Protein sequence | MISVREKIAY GLGDTASNII FQTVMMFLLL FYTDVVGLSP AVVGTMFLFV RLIDAVTDPI MGNLADKTRT KWGQFRPYLL WLALPFALIS ILAFTTPDLT GNNKVIYAFV TYTLLMIAYT AINIPYCGLG GVITADAKER VTVQSYRFVF GMLGGVIVAG ATMPMVEWFG QGDTAKGYQY TMVAMSSLGV VLFLLCFLGT KERVKPPENQ DSSMKENLQS LWKNDQWRIL CIASFYLLTG QVLRLTLAVY YVKYFLGRED LITSFLTLGV VASMIGCAVA QPLAKRVCKI KAYIALQSLS AVICLASFLI SPNQIILAFV AFISWKFFLD MASPLLWAKM ADTIDYGHKK TGIRVTGLVY SGVIFFIKMG IAIGGALAGW LLTFYGYQAD LEQSEATKQG LLLSFTVLPA LGSFAVAWVM RKYTLTEQRV VQIQVELSTE TK
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