| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3568 |
|---|
| Symbol | ubiF |
|---|
| ID | 3521231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3700906 |
|---|
| End bp | 3702111 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637286016 |
|---|
| Product | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase |
|---|
| Protein accession | YP_270236 |
|---|
| Protein GI | 71280762 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.537464 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACATT TTGATTGTGT GGTTATTGGC GGTGGTATGG TTGGTGCAGC AAGTGCATTG
ACCTTAGCGC AACTTGGTTT AAAGGTTGCT TTGGTGGAGA AATTCACGCC CCAAGCTTTC
AGTGCTGAGC AACCTCTTGA TTTACGTGTA TCAGCGATTT CTTTAGCTTC ACAAAACTTA
CTCAATCAAG TTGGCGCATG GCAACAAGTT AAACAATGGC GCAGTTGTCC TTACAAACGT
TTAGGTGTTT GGGAGTATGA AAGTGCTTAT ACTGAATTTA ACGCTGACGA CATTGAGCAG
TCACATCTAG GACATATCGT AGAAAACCGT TTGATTCAAC TCGCGCTATG GCAACAAGTT
ACTGCTATGA GTAATATTCA CACATACTGC CCAGAAAGCT TACTCTCCCT AAACCAAGAT
GATGACTCCG GCAATAACAG AGCAACACTA ACACTAACTA ATAGCGTGGT AACGGCAAAG
CTAGTTATTG GCGCTGATGG CGCTCAATCA AAAGTAAGGC AAATGTCTGC TATTGGCATG
ACAGGCTGGG ACTATCAACA GTCAGCCATG TTGATTAATG TTGAAACGTC AATGTGCCAA
CAAGACATTA CCTGGCAGAA ATTTTCACCT ACAGGGCCAG TAGCCTTTTT ACCATTGCCA
GGACAAAGTC CATTAGGTGG TTATGCCTCT TTAGTTTGGT ATCACCAACG AGATGAAATA
ACCCGCTTAG CTTCGTTATC AAATAGCCAA CTGCAACAAG AAGTACTTAA ATGCTTTCCT
GCACAATTGG GTGATATCAA GGTGCTGGCC AAAGGTGACT TTTCATTAAC ACGTAGACAC
GCTAATACCT ATCAGCATAA GCGAGTTTTG TTATTAGGTG ATGCAGCTCA TACTATCAAT
CCAATGGCCG GGCAGGGGGT AAATTTAGGC TTTAAAGATG TACTGGCCTT GCAGCATGTT
ATCGCGGAAG CGATTGGCAA TGGTGAAGCA TGGCATGATG AGGCTGTGTT AGTTCGTTAT
GAAAAAATGA GACGCAAAGA TAACTTACTT ATGATGTCTA CTATGGATGC TTTATATGCT
GGTTTTAGTC ATCCTTCACC ACTTATTAAA GCTGCCCGTA ATTTAGCCTT GTTAGCGGTT
AACAAAGTAC CTGTTCTAAA CTCGACTATA AAAAACAAAG CATTGGCTTA TGCGTGTGGT
TTATAG
|
|---|
| Protein sequence | MEHFDCVVIG GGMVGAASAL TLAQLGLKVA LVEKFTPQAF SAEQPLDLRV SAISLASQNL
LNQVGAWQQV KQWRSCPYKR LGVWEYESAY TEFNADDIEQ SHLGHIVENR LIQLALWQQV
TAMSNIHTYC PESLLSLNQD DDSGNNRATL TLTNSVVTAK LVIGADGAQS KVRQMSAIGM
TGWDYQQSAM LINVETSMCQ QDITWQKFSP TGPVAFLPLP GQSPLGGYAS LVWYHQRDEI
TRLASLSNSQ LQQEVLKCFP AQLGDIKVLA KGDFSLTRRH ANTYQHKRVL LLGDAAHTIN
PMAGQGVNLG FKDVLALQHV IAEAIGNGEA WHDEAVLVRY EKMRRKDNLL MMSTMDALYA
GFSHPSPLIK AARNLALLAV NKVPVLNSTI KNKALAYACG L
|
|---|
| |