Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3518 |
Symbol | rnd |
ID | 3519149 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 3656526 |
End bp | 3657665 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 637285966 |
Product | ribonuclease D |
Protein accession | YP_270192 |
Protein GI | 71278230 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATTATC AATTGATTGA AGATCAGAAA AGCTTAAATA ATTTATGCGA GCAACTAGTT AAAGCTAAAG TGTTAGCCAT AGATACTGAG TTTGTTCGTA CACGTACTCT GTATGCTAAA TTAGGATTAC TTCAGGTATG CGATGGAGAG CAATTAGCAC TTATTGATCC TCTTGCAATT GATGATTTAG CACCTTTTTG GGCGTTACTT ACCAACGAAA ATATCACTAA AGTGCTGCAT GCTTGTTCAG AGGATTTAGA AGTTTTCTTA ACTGCTGGAA ATTGTAAACC GGTGAATTTA ATTGATAGTC AGATCATGAT GTCATTTTTA GGTCATGGTT TATCTTTAGG TTATGCCGCT ATGGTAAAGC ACTTTACTGA TATCGAATTA GATAAATCGG AATCACGTAC TGATTGGACA AAAAGGCCAT TAACAGAAAA ACAATTGGAC TACGCCAGTG CAGATGTTGA TCATTTATTT GATATTTACC CTAAATTATT AGCTGAAATT ACTCAAGCTG GTTTTTTAGC TTATGCTCAG ATAGAAACAC AGAGCATGAT AGACAAAAAG TTTACGCCTA TCATTGAAAG TGAAATGTAC CTTAATATCA AGATGAACTG GCGATTAAAT CCTAAGCAAT TAAATTTATT AAAATACTTA GCAAGTTGGC GTTTTCAGCA AGCAAAAAAG CGTGATTTGC CTCTTGGTTT TGTTGCAAAA GATCATACCT TAATGGCCTT AGCACAAAGC AATCCAGAGA GTGTAAACGC CATGCTTACG CTTGAAGGAG TCGAAACACT TGATATTCGC CACAAAGGTA AAGCTATGTT GGCGGTTTTA AGCCAAGCAG AACAGGCGGA AGTAAGTAGT TATCCAGATA AAATTGATAG GTTAGATGAA TATCCCGGCT ACAAACAGAT ATTTAAAAAG TTGAAAACGT TTTTAATTAC GGCAAGTGAG CAGCAAGGCT TAGCGATTGA AAATGTTGCA TCAAAGAAGC AAATCAATCA ATTTTTAACT TGGCAGTTTG ATCTTAATGA CGCTCGCAAT AGTTCGGCTA AGGTTGATCT CATAACTGGT TGGCGTTACG AGTTGTTTGG TCAAACCTTG TTAGATTTTG CCCAGCAAGG TTTCGAATAA
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Protein sequence | MHYQLIEDQK SLNNLCEQLV KAKVLAIDTE FVRTRTLYAK LGLLQVCDGE QLALIDPLAI DDLAPFWALL TNENITKVLH ACSEDLEVFL TAGNCKPVNL IDSQIMMSFL GHGLSLGYAA MVKHFTDIEL DKSESRTDWT KRPLTEKQLD YASADVDHLF DIYPKLLAEI TQAGFLAYAQ IETQSMIDKK FTPIIESEMY LNIKMNWRLN PKQLNLLKYL ASWRFQQAKK RDLPLGFVAK DHTLMALAQS NPESVNAMLT LEGVETLDIR HKGKAMLAVL SQAEQAEVSS YPDKIDRLDE YPGYKQIFKK LKTFLITASE QQGLAIENVA SKKQINQFLT WQFDLNDARN SSAKVDLITG WRYELFGQTL LDFAQQGFE
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