| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3477 |
|---|
| Symbol | lolE |
|---|
| ID | 3520981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3615303 |
|---|
| End bp | 3616571 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637285925 |
|---|
| Product | lipoprotein releasing system transmembrane protein LolE |
|---|
| Protein accession | YP_270151 |
|---|
| Protein GI | 71280515 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAAC CGTTAAGTAT TTTTTTAGGC TGGCGTTATG TCCGAGGTCG ACACGGGAAT
GGTTTTTCGG CGTTTATCTC AGCTTCTTCT ACTATCGGTA TAGCTTTAGG TGTCACTGTG
CTTATTGTCG TACTTAGTGC TATGAATGGC TTTGAACGAG AACTATCTGA AAAACTTCTT
TCGATAGTAC CGCATGTTGA GTTAGTCAGC GTTAATGAGC CAATAAAAGA TTGGCCAAAA
AGTATTGAAA AAGTAGAAAT AGAATCGTCA GTCATTGCGG CAGCGCCAGT TATTAAAATG
ACAGGAATGC TACAACACGG TTTAAAGCTC AAGGCCGTAG AGGTTCGTGG CGTAGATGCG
AAACTTGAAA AGCAAGTATC AAGCATTGAT GATTATATTA TTGCTGGTGA GTGGCAAGCT
TTAATGGCTA GTGAGTTAAA TGAAAACACC ATTGTTATTG GTAGTGGTGT GGCAACAAAG
TTATCGGTAG AACTCGGTGA TAAAATACAA CTATTGTTAC CACCACCTGG GGGAAGCAAT
GATGTTAAGC AAGTGTTTTC TGCGCCGATT ACCCGTCAGG TAGAAGTGGT TGGTATTTTT
AAATTTGGTG GCACAGTAGA TGAAACGTTA GCTTATATCC CTCTGACGCT AGCCAGTGAG
GTAATGGGAT ATAAAGAGAA TGAAACACAA AGCATACGTT TAAAAGTTAC TGATGTTTTT
TCTGCGCCTA AAATTGCCCG ACAGGTCGCC TATAATTTCG ACCACTATGT TTATATTAAT
AACTGGACTA GAACCCAAGG ACATTTATTT AATGACATTC AACTAGTGCG TATGGTGATG
TTTATTGTCT TGGTGTTAGT TATCGGAGTG GCTAGTTTTA ATATTGTTTC AACCCTTATT
ATGGCGGTTA ATGAAAAACA AGGTGATATC GCTATTTTAA AAACTATGGG AGCAAGCTCA
AGTACCATTA TGCTGGCTTT TATTGCACAA GGTCTGGTTA ATGGTGTTGT TGGCAGCTTG
TTAGGCGCTA TGTGCGGTGT TTATTTAGCT TTAAACCTTA CCGATATTAT TAGCACGCTA
GAGCAGTTAA TGGGAATTAC CTTCTTGTCT GGCGATGTGT ACTTTATTAA CTACTTACCC
AGTGTTCTAC ATGCGAGTGA TGTGTATATC ACAATTATTA CCGCACTCAT TATGAGCCTT
TTGGCAACGT TATATCCAGC ATGGCGAGCG ACTAAAATAG AACCTGCGCA AGTGCTAGGT
CAGTTATAA
|
|---|
| Protein sequence | MFKPLSIFLG WRYVRGRHGN GFSAFISASS TIGIALGVTV LIVVLSAMNG FERELSEKLL
SIVPHVELVS VNEPIKDWPK SIEKVEIESS VIAAAPVIKM TGMLQHGLKL KAVEVRGVDA
KLEKQVSSID DYIIAGEWQA LMASELNENT IVIGSGVATK LSVELGDKIQ LLLPPPGGSN
DVKQVFSAPI TRQVEVVGIF KFGGTVDETL AYIPLTLASE VMGYKENETQ SIRLKVTDVF
SAPKIARQVA YNFDHYVYIN NWTRTQGHLF NDIQLVRMVM FIVLVLVIGV ASFNIVSTLI
MAVNEKQGDI AILKTMGASS STIMLAFIAQ GLVNGVVGSL LGAMCGVYLA LNLTDIISTL
EQLMGITFLS GDVYFINYLP SVLHASDVYI TIITALIMSL LATLYPAWRA TKIEPAQVLG
QL
|
|---|
| |