Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3277 |
Symbol | uup |
ID | 3522523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 3406270 |
End bp | 3408207 |
Gene Length | 1938 bp |
Protein Length | 645 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637285726 |
Product | ABC transporter, ATP-binding protein Uup |
Protein accession | YP_269959 |
Protein GI | 71282051 |
COG category | [R] General function prediction only |
COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATTAT TAAGAATAGC CAATGGTGAG CTTGCCTTCG GCGAAGATAA GATTTTAAAT AAAGCAGATT TAAGTGTACA AACTGGCGAG CGTATCTGTT TAGTAGGGCG TAATGGTGCA GGTAAGTCTA CTTTAATGAA GATATTGATG GACTTGCAAG GTTTAGACGA TGGTCAAATT TTAAAGTCTA GTACCATGAA AATGTCAATG CTAGAACAAG ATCCACCAGA ATCGTCTGAT ATCTCTGTGT TTGATTATGT TGCTGAAGGG GTAAAAGAAA ACGCTGAACT TATCCGTCGT TATCACGCTT TAATTCACTT GATTGGCGAA GATCCAAGTG ATAAAAACCT TAACAAGTTA GCAAATGTGC AAGAAGAGCT TGAAAAAGCT AATGCTTGGT TAGACGAACA GCGCATTGAT CAAGCCATGA CTACCTTATC ATTGGATGCA GATGCTAAAA TTTGCGACTT ATCTGGTGGT TGGTTACGTA AAGTTGCGTT GGCTAAAGCA CTAGTTACCA GCCCTGATAT TTTACTACTC GATGAGCCAA CTAACCATTT AGATATTGAA AGCGTGTTAT GGCTAGAGCA ATTCTTAAAA GACTTTGCCG GTACTATTAT TTTTATCAGC CATGATAGGG CGTTTATCCG TGGTTTATCT ACTCGTATTT TAGATTTAGA TCGCGGTAAA TTAAAAAGTT ATCCGGGTGA TTACGATTTG TATATCGAGC AAAAACAGCA TGACTTACAA GTTGAAGATC AACAAAATGC GCTATTTGAT AAAAAATTAG CGGAAGAAGA AGTATGGATC CGTCAAGGGG TTAAAGCCCG TCGAACCCGT AATGAAGGCC GAGTTCGCTC ATTAGAAAAA CTTCGTCTTG AGCGCACAGC TCGTCGCGAT GTGCGTAATC AAAGCACTAT GAATATTACT CAGGGCGATC GCTCTGGCAA ACTAGTCTTT GAAGCGGAAG ATGTCAAAGT AGCCTTTGGT GATAATGTAG TGATTGAAAA CCTCAACCTA CTTATTACCC GTAATGACCG ATTAGCGTTA ATTGGTGCTA ACGGTACGGG CAAGTCAACT TTAATTAAAC TCATCATGGA AAAGCAAGCC GCTACAAGTG GTAAAATGCG CTCAGGTGTT AATTTAGATA TTGCTTATTT TGATCAGCAT CGTGAAGCCC TTGATTTAAA TCTAACAGTA CAAGAAATTG TCGGTGAAGG TAAACAAGAA GTTGTAGTGA ATGGCCGTTC TCGCCACGTA TTAGGTTACC TACAAGATTT CTTATTTAGC CCTAAAAGAG CACGTACACC AGTAAGAGCT TTATCAGGTG GAGAGAAAAA CCGATTATTA CTTGCTCGAC TCTTTTTACG CCCGAGTAAC TTGCTTATTC TCGATGAGCC GACCAACGAC CTTGATATTG AAACATTAGA ATTGCTAGAA GAAGTTGTTG CAAATTATGC TGGAACCGTT ATTTTAGTGA GCCATGATCG CGATTTTGTT AATAACTGTG TGAATACTTG TTTGTATTTT GACGGTACCG GACAGATAAA TCAGATTGTT GGCGGTTACG ATGATGTGGA TGATTACCTC GCTTTAAAAA AGACACAACG CCAAAGCATG GCTGAAGGTG TACAACAAAA AAGTAATCAA GAAAAGCAGA CTAAAAGTAG TGTTACTTCT GCAGCAAATA ATGTTTTGGC AGAGCCTGAA GCTAAGAAGA AAAAGCTATC GTTTAAAGAC GCTCGTGAGC TTGAAATGCT GCCTGGAAAA ATTGATGAAT TAGAAAGTTT GATTGATTCA CTGCAGGCAC AAGTTAATGA TGCTGACTTT TTTAGCCAAG ATGAGAAAAT AACACAAAAA GTTTTGAACC AGCTGGCAGA AAGCGAGTCA AACCTTGAAG TCGTTTATGC CAGATGGCAA GAACTCGATG ATGAATAA
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Protein sequence | MELLRIANGE LAFGEDKILN KADLSVQTGE RICLVGRNGA GKSTLMKILM DLQGLDDGQI LKSSTMKMSM LEQDPPESSD ISVFDYVAEG VKENAELIRR YHALIHLIGE DPSDKNLNKL ANVQEELEKA NAWLDEQRID QAMTTLSLDA DAKICDLSGG WLRKVALAKA LVTSPDILLL DEPTNHLDIE SVLWLEQFLK DFAGTIIFIS HDRAFIRGLS TRILDLDRGK LKSYPGDYDL YIEQKQHDLQ VEDQQNALFD KKLAEEEVWI RQGVKARRTR NEGRVRSLEK LRLERTARRD VRNQSTMNIT QGDRSGKLVF EAEDVKVAFG DNVVIENLNL LITRNDRLAL IGANGTGKST LIKLIMEKQA ATSGKMRSGV NLDIAYFDQH REALDLNLTV QEIVGEGKQE VVVNGRSRHV LGYLQDFLFS PKRARTPVRA LSGGEKNRLL LARLFLRPSN LLILDEPTND LDIETLELLE EVVANYAGTV ILVSHDRDFV NNCVNTCLYF DGTGQINQIV GGYDDVDDYL ALKKTQRQSM AEGVQQKSNQ EKQTKSSVTS AANNVLAEPE AKKKKLSFKD ARELEMLPGK IDELESLIDS LQAQVNDADF FSQDEKITQK VLNQLAESES NLEVVYARWQ ELDDE
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