Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3245 |
Symbol | |
ID | 3518970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 3375927 |
End bp | 3377393 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 637285694 |
Product | sigma 54-dependent DNA-binding response regulator |
Protein accession | YP_269935 |
Protein GI | 71278402 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.482559 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGAACT TAAATAAATC TAGAATTTTA TTTGTAGATG ATGAACCAGA AATTCTGCGT TCTCTCGAAC GTATAACAAA AAAATTGGAT GCCGTTATTT TAACTGCTTC TAGTGGACAA GACGCACTTG ATCTTATTAA TGAGTGTCCT GTAGATGTCA TCGTGTCTGA TTTTAATATG CCAAATATGG ATGGTAATCA ATTACTGGAA CAGGTTGCTA AAATTTCACC AGAAACAGTT CGTATGGTAC TGACAGGCCA TGGTGATATG GAAATGATCG TCAATTTGAT TAACAATGGC CATATCTGGG GCTTTCTTCA AAAGCCTTGG GATAACTTCG ATCTTATAAT TAAGTTACAA CAAGCCTTGC AATTACAACA GGTTTTGGCC GAACGAACGT TAATGCGAAG AACAATTGAT CAATACCAAA AATATCATAA ATCTAGTTTT GAAGGTTTCA TCGGTGATTC AGTGGCTATG CAATTTGTAT ATTCATGTAT CGAACAAAGC GCACCTAGTA ACGCTTCTGT CTTTATTACA GGACCAAGTG GTGCAGGTAA AGAAGTTGCG GCACAAGCTA TTCATCACTT AAGCAAAAAG AAAAATGGGC CCTTTATTGC GCTTAATTGT GCGGCTATTC CGTCAGAATT AATGGAGTCG GAAATTTTTG GTCATATTAA AGGCGCATTC TCAGGGGCTG TTTCTAACCG AGATGGAGCG GCCTCTCTGG CAAATGGTGG TAGTCTTTTT CTTGATGAAA TAGGTGAAAT GGATATTAGT TTACAAGCAA AACTATTACG GTTTATTCAA ACCGGTTGTT TTCAAAAAGT TGGTAGTGGA AAAGAAGAGA AAGTAGATAT TCGTTTTATT AGTGCGACCA ATAGAGAGCC ACAAATTGCC ATTGCCGAAC ATAAATTACG TGAAGATCTC TTTTATCGGT TAAATGTTAT TTCAATAGAT TTGCCGGCGT TAAATGAACG AGATAATGAT ATTCTTAAAT TAGCTGAACA TTTTTTAAGA CACTTTAGTG ACATTGAGGG TAAGGTATTT GCTGGATTCT CTTCTGGTGC AGAGGCATTA ATAAAGTCTT ATTCATGGCC GGGTAATGTT CGCCAGTTAC AAAATATTAT TCATAGTTCA ACCGTTATGT CTGAAGGACC ACTAATTTCT GAAAAGATTA TTGCTCAACA ACTGGGTAGA CAAAACAAAC AAGCAGAGCC AACGTCTAAT ACTAATAAAC AAAGCGACAT CCCTTCAATA AATCAGCAAA ATCAAAATAC GAGTGTTCAT CAGGGGAATC ATTCGACCTC ATCAATTATT ACCTTGGCTG AAGTTGAAAA ACAAGCCATT GAAAAGGCCA TAGACTCGTG CCAAGACAAT ATTGTAAAAG CTGCGAGTGA ATTGGGCGTA AGTCCATCAA CACTCTATCG AAAAATCCAG CAATGGCAAA CATCGCCAGC AGAATAA
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Protein sequence | MQNLNKSRIL FVDDEPEILR SLERITKKLD AVILTASSGQ DALDLINECP VDVIVSDFNM PNMDGNQLLE QVAKISPETV RMVLTGHGDM EMIVNLINNG HIWGFLQKPW DNFDLIIKLQ QALQLQQVLA ERTLMRRTID QYQKYHKSSF EGFIGDSVAM QFVYSCIEQS APSNASVFIT GPSGAGKEVA AQAIHHLSKK KNGPFIALNC AAIPSELMES EIFGHIKGAF SGAVSNRDGA ASLANGGSLF LDEIGEMDIS LQAKLLRFIQ TGCFQKVGSG KEEKVDIRFI SATNREPQIA IAEHKLREDL FYRLNVISID LPALNERDND ILKLAEHFLR HFSDIEGKVF AGFSSGAEAL IKSYSWPGNV RQLQNIIHSS TVMSEGPLIS EKIIAQQLGR QNKQAEPTSN TNKQSDIPSI NQQNQNTSVH QGNHSTSSII TLAEVEKQAI EKAIDSCQDN IVKAASELGV SPSTLYRKIQ QWQTSPAE
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