Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_2868 |
Symbol | |
ID | 3521291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 2999452 |
End bp | 3000798 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637285321 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_269573 |
Protein GI | 71280822 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAATA TAATGACGAA TATTACCAGC AATAAAGTTT CTAAAAAAAT GAAACTCATT ACTTTAAGCA GTTTATTTAT CGGCTTAGCT ATCGCTTCAA CCACTGCATT ATCATACAAG GATGCCGCGC TAGTAAATGC GGCGTCGGTA GAGCAATCAA TCGAAATAAA AACTGACCAT GATCATGACG CTGAAAGTGA AAACGTACTT GATAAAAGTG GTCATGAACA CGGTAGTGAT GACAGCAAAG ACGATCATGC GACTGAGGAA AAATCTGATC ACGGTCATGA CCATGGTAGT GAAACAGCAA CTAAAGCAAC GACTGAAGCA GAGCATGAAG AAGGCATAAG TTTTAGTCCT GAAAAAATGG CACTCGCCAA TATCAAAGTG ACTAGCTTAA AGCCGGCAAT ATTCGCTAAA AGTGTCTATG CACCAGGAGA AATAAAAGCG AACGGTTATA CCAGCTATAT TGTCTCCCCA CGTACTGAAT CGGTAGTGAT CAGTCGTCAT GCCATTTTGG GTGAACATGT TACTAAGGGT CAGGCTTTGG TTACATTATT TAGTGAATCA ATGGCTGAAG CACAAGCACA ATATCGTGTT GCATACAGTG ATTGGCAGCG CACTAAAAAG TTGGGTCTTG GCACGGTTAG CGAAAGCCGT CTGTTAGCCA GTGAAACAGA TTATATCTCT GCTTATGGTC GATTAACTGC CTTTGGTTTA ACCAAAGCAG CCATTAAAGA TATTGTAAAA AACAACTCTT CAAACCTCGG CGAATATACC TTAGTGGCTC AGCGTTCTGG TGTGGTCTTA AGTGATGATT TTTCTCAAGG GCAGCGCGTT CCTGCAGGTG AAAAAATCAT GGTATTGGCA GATGAAAAAG ACTTGTGGGT TGAAGCGCGT GTTTCGCCAA ATAAAAAGTT AAGTCTTCCT ATTGGCACCA TAGCAAAAGT TGAGTTTGCC GGGCAAATAC ACGTGGCTAA GGTCATTCAA GAAGCCCATA CCATTGACCC AAGTACCCGT ACCCGAATTG TAAGATTGTC TGTTGAAAAT ACTGACGACA GTTTGCATTC AGGCATGTTT GTTAATGTTA ATTTTCAGTT TGATACCAAA AGTCCGGTAA TAGCAGTGCC AGAAACGGCA TTAATGCGCG GTGCAGATGG TGATTGGACA GTATTTGTTG AAGACCACCC AGGTGAATTT AAAGCGGTTG AAGTTGAATT AGGCCAGCCA TTAGGTAATT ACCGTCAAAT TATCGGTATC GCGCCTAATA CCCGCGTGGT GACAAAAGGT GCATTTTTTG TTGCGTCAGA AATAGCAAAA GGCGGATTTG ATCCGCATGG CCATTAG
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Protein sequence | MKNIMTNITS NKVSKKMKLI TLSSLFIGLA IASTTALSYK DAALVNAASV EQSIEIKTDH DHDAESENVL DKSGHEHGSD DSKDDHATEE KSDHGHDHGS ETATKATTEA EHEEGISFSP EKMALANIKV TSLKPAIFAK SVYAPGEIKA NGYTSYIVSP RTESVVISRH AILGEHVTKG QALVTLFSES MAEAQAQYRV AYSDWQRTKK LGLGTVSESR LLASETDYIS AYGRLTAFGL TKAAIKDIVK NNSSNLGEYT LVAQRSGVVL SDDFSQGQRV PAGEKIMVLA DEKDLWVEAR VSPNKKLSLP IGTIAKVEFA GQIHVAKVIQ EAHTIDPSTR TRIVRLSVEN TDDSLHSGMF VNVNFQFDTK SPVIAVPETA LMRGADGDWT VFVEDHPGEF KAVEVELGQP LGNYRQIIGI APNTRVVTKG AFFVASEIAK GGFDPHGH
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