Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_2274 |
Symbol | metC |
ID | 3518756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 2372180 |
End bp | 2373361 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637284731 |
Product | cystathionine beta-lyase |
Protein accession | YP_268994 |
Protein GI | 71278617 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAAG ATACTAAAAT AGTAAATGCT GGACGTAGTG CTAAATGGAC TAATGGGGTT GTTAACCCTG CGGTAACACG CGCATCTACC GTGGTATTTA ATACTGTCGC AGAGATGAAT AATGCTGTGG CCAACCGACA TAATCAAACC ATGGTGTATG GTCGTCGAGG TACTACGACT TCTTTTGCTT TTAGCGATGC TATGACTGAG TTAGAAGGCG GAGCAGGTTG TGCTTTATAT CCTTCAGGTA CTGCAGCTAT TACCAATGCT ATTTTAGCTT TCGTTAAGCA AGGTGACCAC ATCTTAATGG TTGATAGTGC TTATGAGCCT ACGCGTGATT ATTGCGATAA AATATTAGCT AAAATGGGTG TTAGTACCAC CTATTATGAT CCTATGGTTG GTGCTGATAT TGAAGCATTG ATTCAAGATA ACACCTGTCT AATTTTCTTA GAGTCACCAG GCTCTATTAC CATGGAAGTA CAAGATGTTC CTACTATTAG CGCTATAGCA CATAAGCATG ATTGTATCGT TATGCTTGAT AATACTTGGG GCGCAGGTAT TAACTTCAAG CCGTTTGATT ATGGTGTTGA TGTAAGTATA CAAGCAGCAA CCAAATATAT TGTTGGTCAT TCTGATGTAA TGTTAGGCAC AGCGACAGCG GTAGAAAAAT ATTGGCCTCA ACTGAGAGAT TACAGTTATT TGATGGGACA ATGTACCTCT CCTGATGATC TATACCTAGC ACTTCGGGGC ATTCGTACTC TTGGGATAAG ATTAAAACAG CACCAAAAAA GTGCAACTAA GGTAGCTCAA TGGTTACAAG AACGTCCAGA GGTCGCTAAA ATATTACACC CCGCGTTTGA GTCATGTCCA GGTCATGAAT TTTTCAAACG AGATTTTGAA GGCTCTAATG GTTTATTTTC TTTTGTACTT AACTGCGGTA ATAAAGAAGC ATTAACAGCA TTTTTAGATG GTTTACATCA TTTTAAAATG GGTTACTCAT GGGGAGGTTT TGAAAGTTTA ATTTTAGGTA TCACTAATGT AAACGCTATT CGAAGTGCGA CTACATTTGA TTGTGAGTTT CCGCTAATTA GACTACATAT CGGTTTGGAA GATGTAGACG ATTTAATTGA AGATTTATCG AAAGGATTTG AGCGTTTTAA TCAAGTACTT GCCAATTCAT AG
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Protein sequence | MKQDTKIVNA GRSAKWTNGV VNPAVTRAST VVFNTVAEMN NAVANRHNQT MVYGRRGTTT SFAFSDAMTE LEGGAGCALY PSGTAAITNA ILAFVKQGDH ILMVDSAYEP TRDYCDKILA KMGVSTTYYD PMVGADIEAL IQDNTCLIFL ESPGSITMEV QDVPTISAIA HKHDCIVMLD NTWGAGINFK PFDYGVDVSI QAATKYIVGH SDVMLGTATA VEKYWPQLRD YSYLMGQCTS PDDLYLALRG IRTLGIRLKQ HQKSATKVAQ WLQERPEVAK ILHPAFESCP GHEFFKRDFE GSNGLFSFVL NCGNKEALTA FLDGLHHFKM GYSWGGFESL ILGITNVNAI RSATTFDCEF PLIRLHIGLE DVDDLIEDLS KGFERFNQVL ANS
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