Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_2200 |
Symbol | |
ID | 3522393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 2296303 |
End bp | 2298207 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 637284657 |
Product | GGDEF/EAL domain-containing protein |
Protein accession | YP_268925 |
Protein GI | 71281921 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTATAAGT TTTCTAAGTT ATTTATCAAA AATATATTGT TTGCGTTAGT TTTCATAGTC GCTTTAGGTG GCATTGCATT TTTCTTGCTT TCCACTTATG TGAATCAGCA AACGCTATCG CAACAAAAAA CCATTCAAAC TATTAGTCAA CAATTTGTTG CCGATGATAT TCCTGCACAA GAGATCGCTA CTACGTTGTC GGCTGTTTTA AAGGCCAGTG ACGATTACCA AACCTTAATT ATTAAACGTG ATTCTCTAAT ACTCGTTAAT TATCAAAATA ATTATATTCA TCCTCTCGAT TCTTTTTTAG CACAACGTAA AACAGTCTCG GTAAGTGAGC TTAATTTACA AGTTCAATAC CAATTAGATT TTATCGGAAT AATTAATTTT TTAACGCAAC TGTTTATCGG TGTTATTGCG TTATCAATTA TATTTGTTTT TATTTCAGCA AGATTGAATT ATAAATTACA ATTAACTATT TTTAGTGTGA TCAGCAAGCA AATTGGTAAT GAACTAGCAA AAATTAATAA TGCCGATTTC ATTACCAAGG AACAGGATAA TCAACAACTA CTTGAGATTC CTGCTTTAGA AGAAGGTATT GCCGAAATCA AGACAATGAT GACAGAGCAA TTTAATAATA CAACCAATCT AGAAATAGAA GCCCATGTAG ACAGCTTAAC GGGCATTGAA AATCGAAATC GATTTGTCCA ATTTTATGAA AACGAAATTG TAAATGACAG CCCGGTTAAT TTTGGTGTTC TTCTAATTAC TCGTTGCTCT GAGTTACAGA CCATTAATCA AATCCACGGT TATAGCTCAG GTGACAATTA TATTGTAAGA GTGGCCGAGA TAATAAAAAC GGCTTTGATT TCAAGACCTA CGGGGAAGAT TTTTCGTCTC AACAGTTCCG ATTTTGCCAC TATATTACCT AACGTGAAGC TAAAGCTAGC TGAAGACTAT GCCAGTGAGT TAACAATTAA GTTTAATGAC TATCAGCAAG TCAATGAATT AGATTCTGTA GCCTTCACAG GCTTAGTCTA TTTTGATAAA TCCAAGCCAT TAGGTGAATT ATTAGCGCTA GCCGATACCG GAGTCAGTGT TGCTCAAACA CAAAAAGTAA ATTCATGGTA TTCGCAAAAA GATATTGATA TTTTAAATGA TAGCAGCGCA AACTATGGCA ATCAAAACTG GCGACAAGAG ATAGATAGTG TATTAGGTGC TGGTCGCATC AGCTTATTAT TACAGCCAAT CCAACCAAGT GGTCGTAATA CTCGCGTTTA TGGAGAAATA TTAGCGCGTT TCCTTAACGC TAACAATAAC ATGTTACCTA CAGCAACATT TATTGCTATG GCAGAAAAAC TAGACAAGAT AACCGATGTA GACCGACTTA TCATAGACAC GGCCATTAAA GAGATAACCA GCAAAAATAT GCTCGACAGT AGCTATGGTA TTAATATTAG TCCTCGGAGT ATTAACAATG AGCACTTTAT GATCTGGCTA GAGCGTAAGT TATTGCGCGA ACCAAGTGCA GCCTCTCGAT TAGTGTTTGA AATATCAGAA CTAGGTCTTC AACAAAATAT TAAAACGGCT AAACGCCTAG TTGACATGCT ACACCGTGTA GGCTCAAGAG TGACTGTAGA GCGATTTGGT GTAGGCTTGA CTTCATTTAA GTTCTTCAGA GATTTAACAC CTGACTACAT TAAAATGGAT AGTTCTTATA CTCGTGATAT TGACGATGAT AAGAACAATC AATACTTCTT ACGCTTAATG GTAGATTTAG CTCACAGACT TGGCATTAGC GTATTAGCTG AAAGTGTCGA AAGCCAAGAA GAAAAGCACA CATTAGAAAA ACTCTTTATC GATGGTTGTC AGGGCTATTA TGTTGGAAAA CCTGCACAAT TATAA
|
Protein sequence | MYKFSKLFIK NILFALVFIV ALGGIAFFLL STYVNQQTLS QQKTIQTISQ QFVADDIPAQ EIATTLSAVL KASDDYQTLI IKRDSLILVN YQNNYIHPLD SFLAQRKTVS VSELNLQVQY QLDFIGIINF LTQLFIGVIA LSIIFVFISA RLNYKLQLTI FSVISKQIGN ELAKINNADF ITKEQDNQQL LEIPALEEGI AEIKTMMTEQ FNNTTNLEIE AHVDSLTGIE NRNRFVQFYE NEIVNDSPVN FGVLLITRCS ELQTINQIHG YSSGDNYIVR VAEIIKTALI SRPTGKIFRL NSSDFATILP NVKLKLAEDY ASELTIKFND YQQVNELDSV AFTGLVYFDK SKPLGELLAL ADTGVSVAQT QKVNSWYSQK DIDILNDSSA NYGNQNWRQE IDSVLGAGRI SLLLQPIQPS GRNTRVYGEI LARFLNANNN MLPTATFIAM AEKLDKITDV DRLIIDTAIK EITSKNMLDS SYGINISPRS INNEHFMIWL ERKLLREPSA ASRLVFEISE LGLQQNIKTA KRLVDMLHRV GSRVTVERFG VGLTSFKFFR DLTPDYIKMD SSYTRDIDDD KNNQYFLRLM VDLAHRLGIS VLAESVESQE EKHTLEKLFI DGCQGYYVGK PAQL
|
| |