| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2128 |
|---|
| Symbol | kdsB |
|---|
| ID | 3522547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 2221756 |
|---|
| End bp | 2222598 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637284586 |
|---|
| Product | 3-deoxy-D-manno-octulosonate cytidylyltransferase |
|---|
| Protein accession | YP_268854 |
|---|
| Protein GI | 71282075 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase |
|---|
| TIGRFAM ID | [TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.352622 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTA GTGACCCTTC AGTATTGAGT AAACCAGCTA CTGGTGATAC CAGCTTTGTT
GTTGTTATCC CTGCTAGATA TCAATCATCT CGTTTGCCAG GTAAGGTGTT AGCCGACATC
GATGGCAAAC CGATGATCCA ATGGGTTGTT GAAAAGGCGC AATTAAGTGG TGCTCGCCAA
GTCATTGTTG CGACAGACAA TGATGAAGTT GCTGCAGTAG TAAACAGTTT TGGCGCTGAA
GTGTGTAAAA CACGTGCGGA TCATCAATCG GGCACTGAAC GTCTTGCAGA AGTCATGGAA
AAATATCAAT TCAGTGACGA TGAAATCATT GTTAATGTAC AAGGTGATGA ACCTTTTATT
CCGCCAGACA ATATCGCACA AGTAGCGAAT AATCTAGCTA ACCAGCAACA AAGTAGTCAT
GTAGCACGCA TGTCGACCTT GGCTATTAAT ATTGACTCTG TAGATGAAGC GTTTAATCCT
AATGCCGTTA AAGTAATACT TGATAAAGAT GGTTATGCCT TATATTTCTC TAGAGCAACT
ATTCCTTATG ATAGAGAGCG TTTTTTAAAT TCAGATGCTA CTACAGAAGA AAATATTCGC
GCAATAGGTG ATTTTTACTT AAGACACGTC GGCATTTATG CTTATCGCGC TGGCTTCATT
AAAGATTATG TCAATTGGCC CACAAGTGAA TTAGAACAAG TTGAAGCGCT AGAGCAGCTA
AGAGTTTTAT ATCAAGGAGA GAGAATTCAC GTCGCGGTCG CAAATAGCCA CGTACCTGTT
GAAGGTGTTG ATACTCCAGA AGATTTAGCC AAAGCAAGAG CATACGCGAC TAGCTTAGTG
TAG
|
|---|
| Protein sequence | MTASDPSVLS KPATGDTSFV VVIPARYQSS RLPGKVLADI DGKPMIQWVV EKAQLSGARQ
VIVATDNDEV AAVVNSFGAE VCKTRADHQS GTERLAEVME KYQFSDDEII VNVQGDEPFI
PPDNIAQVAN NLANQQQSSH VARMSTLAIN IDSVDEAFNP NAVKVILDKD GYALYFSRAT
IPYDRERFLN SDATTEENIR AIGDFYLRHV GIYAYRAGFI KDYVNWPTSE LEQVEALEQL
RVLYQGERIH VAVANSHVPV EGVDTPEDLA KARAYATSLV
|
|---|
| |