| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1958 |
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| Symbol | |
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| ID | 3520214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2020864 |
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| End bp | 2021880 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637284420 |
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| Product | putative RND efflux system protein, MFP subunit |
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| Protein accession | YP_268688 |
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| Protein GI | 71279753 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACTT TTCAAAGAGA AACTAGTCAC CAACTAAAAG GTCACAAAAA AGTGATTAAA
AATAGAGTCA ATCCCAGTGT TTTATTCTTA TTAGTAACGG CGTTAGCCAG CATAGCCATC
AGCAACAATG CAATGTCAGC AGATACGCAT GGTCATAAAG ATGAGCACAC GGATGAGCAT
AAAAGCGAAC ACAAAGATGA ACATGGTGAA GAAGAAGGGC ATATTGAAAT TACAAAAGTT
AATGCGCAAA AAGCAGGTAT CATCAACGCT ACAGCAGGTA CAGGGCAAAT AAAACAAACG
ACCACTGTCT ATGGTAAAGC GGTGATTGAC TCAAGTGCAA TAAGTCAGGT GCGCGCACGT
TTTCCTGGGC TGATCACTAA ATTAACCGTT AACGTTGGCG ATAATGTTAC GACGGGTGAA
AACATTGCTC AAGTAGAATC AAGCGATAGT TTAACGCGTT ATAACATTAC CGCGCCTATT
TCAGGTGTGA TAACCAAACG TCACGCTAAC CCCGGCGACT TGACCAATCA ACAACCGCTA
TTAACTGTCG AAAACTATAA GCAGTTATGG GTTCAGTACA AGATATTCCC AAGTCAACGA
CAAGCAATTC ACACCGGTCA ACAAGTCACT ATTTCATCAA CAGCTGCCAC AACTCAATCG
AGCATCATGC ATTTAATGGC CAATAAAAAT CAGCCATTTA TCATCGCAAG AGTGCCATTA
GATAATAGCA AAGGTTCATG GGCTCCAGGA CAATTGTTAA CGGGCAGTGT AGTAACTCAT
CAAGTGGATG TTAACTTAGT TATCGATAAT CGTGCCTTTC AATCCGTTGA AGGAAAAAAC
ATTATTTTTG TAACAAATAA AGGGGGATAT GAAACGCGTG AACTAACACT TGGCCAAACT
GATGGACAAT TTAGTCAAGT TATCTCAGGT TTAAAAGCGG GTGAGCAATA TGCGCTGATC
AATAGCTACT TGCTAAAAGC CGATTTAGGT AAAGCTGGCG CAGCGCACGC TCACTAA
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| Protein sequence | MATFQRETSH QLKGHKKVIK NRVNPSVLFL LVTALASIAI SNNAMSADTH GHKDEHTDEH
KSEHKDEHGE EEGHIEITKV NAQKAGIINA TAGTGQIKQT TTVYGKAVID SSAISQVRAR
FPGLITKLTV NVGDNVTTGE NIAQVESSDS LTRYNITAPI SGVITKRHAN PGDLTNQQPL
LTVENYKQLW VQYKIFPSQR QAIHTGQQVT ISSTAATTQS SIMHLMANKN QPFIIARVPL
DNSKGSWAPG QLLTGSVVTH QVDVNLVIDN RAFQSVEGKN IIFVTNKGGY ETRELTLGQT
DGQFSQVISG LKAGEQYALI NSYLLKADLG KAGAAHAH
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