| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1933 |
|---|
| Symbol | |
|---|
| ID | 3521278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1992301 |
|---|
| End bp | 1994379 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637284395 |
|---|
| Product | sensory box protein |
|---|
| Protein accession | YP_268663 |
|---|
| Protein GI | 71280809 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0364295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAA GCAAAGCTGA AAAGGAACTA ACTCATCAAT ATGTTCTTAA TGATTCACTT
CACCAATTAT TTGATGCTGT AAATATTGTT TCCGTACAGG GATATGATGA ACAGCGTCGG
GTAATTTATT GGAATGTCGG AAGTGAATTA CTTTATGGTT ACACCCAAAA AGAAGCACTA
GGGCAAAAAT TAGAAGATTT AATTATCCCT AAGCCCATGC GTGAGATAGT TATTGGTGCG
CACAGTGATT GGATCAAAAA AGGCATTGAA ATCCCTGCTT CAGAAATTAC CCTATGTCAT
AAAAATGGTA ATGATGTAAA TGTTTTTTCA AGTCATGCGC TATTTACTAA TCAATATAAT
AAAAAGCAAA TGTATTGTAT TGACGTCAAT TTAGCTGATG TGAAACATGC CCAATCCCAA
GCACTATTTA AAGAGCATAT GCTTGAGACA ATCTTTAATG CAATACCTGA TTTATTTTTC
TTGATGGAAG TAGATGGGAT GATTGTTGAT TATCATACGG GTGACCAAAA GAATCTCTAC
GTTGCGCCAC ACCAGTTTAT TGGTAAGCGT ATGACAGATT TATTACCTCA GGAGGTCGTC
AGTAAATTTC AAACCCATGT TGATAAAATA TTACAGCAAG AGGGGATGAT AACCTTTGAA
TATGAGTTAA CTATGCCGCA TGGATTGGTG CATTTTGAGG CAAGAATGAG TTATTTGCCT
GAGTATAATC AAATAGTACT CATCATTCGT GATATTAGTG AACAATATAA ATCTGCCGAA
ATAATACGGC ATCAGGCTTA TTTTGATACA TTAACCTCAT TACCCAATCG TTTCTTAGCA
CTCGACCGTT TATCTCAAAT GCTTACTGAA GCTGAAAGGA ATAATGAAAA AATCGCAGTG
CTTTTTCTTG ATTTAGATGA CTTTAAGAAA ATTAATGATT CATTGGGTCA TGAGATAGGC
GATAAAGTAC TCATACAATC AGCCCATAGA TTAAAGCAAG TATTAAGAGA AGGAGATACT
GTAGGGCGCT TGGGTGGTGA TGAGTTTATT GTGCTATTAC GCGGTGTAAC TGAAAATCAT
GATGCGTTAG TTATTACTGA AAATTTACTT AAAAGTTTTA GGGAACCCTT TGTAATAGAT
GGTAGAGAAT TAATGCTGAC CTTGAGTATT GGTGTTGCCA TTTCACCTGA AAATGGCCGT
TGTGCTTCTG ATTTGTTGAG AAATGCAGAT ACCGCTATGT ATAAAGCAAA AGATTTAGGA
CGAAATACTT ATTCGTTTTT TTCTAAGAAA ATGAATACCA TGATGCTCCG TCGTTTTGAA
GTTGAAGAAC AAATGCATGG GGCCTTGGAG CGTAATGAAT TTGAATTATA TTACCAACCT
CAATTTGACG TTAAAAAACA AAAGATCACG GGGGTGGAAG CGTTGTTGCG GTGGCACAAT
TCAGTACTAG GTAATGTAAC GCCGGATGAG TTTATTCCCA TTGCAGAACA CACTGGGCTT
ATTATTCCTA TTGGGCGATT TGTTATTAAG CAAGCCCTCG GTTTTTTAAA TAAATGGCAA
AATATTCATC AGCAAAAATT CACAATGGCA GTTAATTTAT CTCCTTGCCA ATTCAGAGAT
TCAACATTAC TTGGCTTTAT CAAGGATTCA CTGAGTGAAA CAAATGTTAT TGCTGAACAT
CTGGAGCTTG AAATTACAGA GGGAGTATTA ATGAGTGGGC AATCTCATAT TCATGATGCG
TTAGTTGAAA TTAGTGAGTT GGGTATAAAA CTATCAATGG ATGATTTTGG TACAGGGTAT
TCATCCTTAA GCTATTTAAG ACAATATGCT TTTGATGTAC TGAAAATAGA TCAGAGCTTT
ATTCGTGGTA TACCGCTAAA TAAGGCTGAT TGTGAGTTAG TTAATACAAT CATAGCAATG
GCACATAGTT TAGGGCTGAC AGTGGTTGCT GAAGGTGTTG AAACGAAGGA GCAACTCACG
TTATTAGAGG AATTGGGATG TGACTTAGTG CAAGGGTATT ATTTTAGTAA ACCGATACCA
GCGAAGCAGC TTCTTGATTT TTCAGTCCAC TATAAATAA
|
|---|
| Protein sequence | MKSSKAEKEL THQYVLNDSL HQLFDAVNIV SVQGYDEQRR VIYWNVGSEL LYGYTQKEAL
GQKLEDLIIP KPMREIVIGA HSDWIKKGIE IPASEITLCH KNGNDVNVFS SHALFTNQYN
KKQMYCIDVN LADVKHAQSQ ALFKEHMLET IFNAIPDLFF LMEVDGMIVD YHTGDQKNLY
VAPHQFIGKR MTDLLPQEVV SKFQTHVDKI LQQEGMITFE YELTMPHGLV HFEARMSYLP
EYNQIVLIIR DISEQYKSAE IIRHQAYFDT LTSLPNRFLA LDRLSQMLTE AERNNEKIAV
LFLDLDDFKK INDSLGHEIG DKVLIQSAHR LKQVLREGDT VGRLGGDEFI VLLRGVTENH
DALVITENLL KSFREPFVID GRELMLTLSI GVAISPENGR CASDLLRNAD TAMYKAKDLG
RNTYSFFSKK MNTMMLRRFE VEEQMHGALE RNEFELYYQP QFDVKKQKIT GVEALLRWHN
SVLGNVTPDE FIPIAEHTGL IIPIGRFVIK QALGFLNKWQ NIHQQKFTMA VNLSPCQFRD
STLLGFIKDS LSETNVIAEH LELEITEGVL MSGQSHIHDA LVEISELGIK LSMDDFGTGY
SSLSYLRQYA FDVLKIDQSF IRGIPLNKAD CELVNTIIAM AHSLGLTVVA EGVETKEQLT
LLEELGCDLV QGYYFSKPIP AKQLLDFSVH YK
|
|---|
| |