| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1743 |
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| Symbol | |
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| ID | 3520122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1786039 |
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| End bp | 1788198 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 637284206 |
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| Product | sensory box protein |
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| Protein accession | YP_268474 |
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| Protein GI | 71279662 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGTTC ATCGAATAAC AAGTATCGTA AAAAGCATTT CAGACATCAA TAGTGATAAT
TTTTTTGATG AAATTTGTTT GTCACTAAGT CGTGCCATTG ATGCAGATTT TGTTTTTATA
GCGAGTATTG ATGACTCCAA AACCAATGCA ACCTCTATTG CTGTCGCTAA TAGAGGTTGC
ATAGTTGACA ACTTTACTTA TGCACTTAAA TCTTCTCCCT GTGCTGAAGT TTCTAATGAA
TCTATTTGTA CCCATCGTTG TAATATTCAA CATCTGTATC CAGATGACCT CTTACTCAAA
GATATGAAAA TTGATGGTTA TGTAGGCATT CCTTTAAAAA CGAGTAAAGG GCAAGTTAGT
GCAATTTTGG TCGCTTTGTT TGAAGATAAT ATTAGTAATG TTCTGGAAGT GGAAACACTC
TTTATGCTTT TTTCTGGTTT GATAGAGAAA GAAATACATA AAAGTAGCTA CTTAAAAAAA
ATAGAATTTT CTAATAATAT CATTGCTAAT ACTCACGAAG CTATCATGGT GTGCGATAAA
GACAAATTTA TCACTTATAT CAACCCGTCA TTTACGCGTA TGACTGGGTA CACACAAGCT
GATTTGCATG GCAAAACACC CAAAATTTTA AATTCTGGAA AGCAAACTAA AGCCTTTTAT
CAGACCATGT GGGCAGACAT CAATAAAAAT GGTCACTGGC AAGGTGAGAT TTGGAATAAA
TGTAAAAATG GTAGTGAATA TTTAGAATGG CTTTCTATTA CTGCTATTGT AGATGAGTCT
AATGAATTGA CACATTACAC CGCTTTTTTT TCTGATATCA CAGAGCAATA TATAGCGAAA
GAAAAAATAA AATTTCAAGA TTCATATGAC GATTTAACCA AAACAGCCAA TAAAAAAACA
TTATTCACCT TTATCGAACG GTCAATAATA CAATACTCAA ATCAGCTTGA ATGTACTACT
CCTGCGGCCT TACTCGTTAT AGATATTGAT TTTTTTAATA AGTTTAATAG TCTTTATAGT
CATGCATTCG GTGATGAAGT ACTTATGCAA GTCTCTAGTA GGCTCCAGTC ATTGATTAGA
TCAAGCGATA TTGTAGCGCG TACTAGTGGC GATAATTTTG CATTATTTAT TAACCACATA
ACTAATCAGG ATTCGATAGT TTATTTTATC GACAAAGTGA CGCATGCATT CTTAAAACCC
TTTGTCATAG AAGGTATTAA TATAAAAATA ACATTGAGTA TCGGTGTTGC TTGCTTTAGA
CAAGATACAC AGGATGTACA TCGGTTATTT GAAAAAGCAG AACAAGCTAT GTTTGCTGCT
AAAGACAATG GCCGAAATTC TTATGAATTT TATAGTCAAC TGCTATCTGA TAAAGCAAAT
AAAGAAGAAC AATTAAAGCT ATCGCTAGAG TCCGCTATTG AAAATAATGA CTTTTGTGTG
GTTTACCAAC CTATCGTATC ACTGAAAAAT AAATCGGTTA CTAAATTTGA AGTCCTAATT
CGATGGAATA TGCATGGCAA ATGGGTTTCT CCTGTAGATT TTATTCCGAC AGCCGAAAAG
TTTGGTTTGA TATCGAAAAT AGGAGACTTG GTTTTAAATC TAGCCTGTAC CGAATTATGC
AAGCTGAGAA AAATGGGCTT TAGTGATATC GTTTTTAATG TAAACCGTTC TATCTATGAA
TTCTCTTCTG GAGTTAATGA TATTTCATGG CTTGATACGA TAAAAAAATA TGACCTTAAC
CCTGAAAGCA TATGTTTTGA GTTAACTGAA AGTGTTCTTG CGCCTGAAAA TGATAGATGC
ATAACTTTAC TCAATAAACT GCAAAGCGCG GGTTGTACCA TCGCATTAGA TGACTTTGGT
ACTGGCTATT CGTCATTAAA CTATTTACGT AGGTTTCCAA TAGATACTTT AAAAATAGAT
AGAGGTTTTA TTTCTGAAAT GACAAAAGTA GAAGGTGATA AAGTGCTTGT GTCAGCTATT
ATTTCAATGG CTAAAGCACT TGGTATCTCT GTTGTTGCAG AAGGTGTCGA ATTAAAACAA
GAAGTTGATA TTCTTGTCTC ATTAGGTTGT GATTATATCC AAGGTTATTA CTTTTCAAAA
CCATTAGCAC CTGAGTTACT TTCTCAGTAC TTAACTGACT TTGAATATGG TAATCAGTAG
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| Protein sequence | MNVHRITSIV KSISDINSDN FFDEICLSLS RAIDADFVFI ASIDDSKTNA TSIAVANRGC
IVDNFTYALK SSPCAEVSNE SICTHRCNIQ HLYPDDLLLK DMKIDGYVGI PLKTSKGQVS
AILVALFEDN ISNVLEVETL FMLFSGLIEK EIHKSSYLKK IEFSNNIIAN THEAIMVCDK
DKFITYINPS FTRMTGYTQA DLHGKTPKIL NSGKQTKAFY QTMWADINKN GHWQGEIWNK
CKNGSEYLEW LSITAIVDES NELTHYTAFF SDITEQYIAK EKIKFQDSYD DLTKTANKKT
LFTFIERSII QYSNQLECTT PAALLVIDID FFNKFNSLYS HAFGDEVLMQ VSSRLQSLIR
SSDIVARTSG DNFALFINHI TNQDSIVYFI DKVTHAFLKP FVIEGINIKI TLSIGVACFR
QDTQDVHRLF EKAEQAMFAA KDNGRNSYEF YSQLLSDKAN KEEQLKLSLE SAIENNDFCV
VYQPIVSLKN KSVTKFEVLI RWNMHGKWVS PVDFIPTAEK FGLISKIGDL VLNLACTELC
KLRKMGFSDI VFNVNRSIYE FSSGVNDISW LDTIKKYDLN PESICFELTE SVLAPENDRC
ITLLNKLQSA GCTIALDDFG TGYSSLNYLR RFPIDTLKID RGFISEMTKV EGDKVLVSAI
ISMAKALGIS VVAEGVELKQ EVDILVSLGC DYIQGYYFSK PLAPELLSQY LTDFEYGNQ
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