Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1559 |
Symbol | dxr |
ID | 3520686 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 1602504 |
End bp | 1603739 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637284022 |
Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Protein accession | YP_268301 |
Protein GI | 71280222 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.189544 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCTAAAC GTCAACTTTG TATATTAGGT TCAACGGGCT CAATTGGTTG TAGTACTCTC GATGTAGTAA GACTTCACCC TGAACGATTC CAAGTCATCA GTTTAGCTGC TTATACTAGC GTTGATGTGA TATTCGAACA ATGTATTGAA TTTAAGCCAC AGCAAGTAGT ACTCGTCTCT AGTGAACACG CAGCTCTACT TACTCAAAAA TTAAATGACG CAAATGTTAG TAATATTACT GTTTTATCAG GTGAACAAGC TTTAATTGAT ATTGCCGAGT GTCAAAATTC AGATACAGTG ATGGCGTCTA TTGTCGGTGC TTCTGGTTTG TTACCGACGC TCGCCGCAGT GAATGCGGGA AAACGAGTGT TATTAGCGAA TAAAGAAGCC TTAGTAACAT CAGGCGCTAT TTTTATGGCT GCTGTAAAAG CCTCAGGCGC AGAGCTTTTA CCTATCGACA GTGAGCACAA TGCAATCTTC CAGTGCTTGC CATCCCAGCA GCAAGCTGAA ATAGGTGAAT GCCAACTTCT TGCCAATGGC ATCAGTAAGA TATTGTTAAC TGGCTCTGGC GGGCCTTTTA GAACTAGAGC TATTGATACC CTAGAATCAG TGACACCTTC ACAGGCGTGC GCTCACCCGA ACTGGGATAT GGGACGAAAA ATATCCGTTG ATTCTGCCAC TATGATGAAT AAAGGTCTTG AATTTATTGA AGCTAAGTGG CTTTTTAATG TTGAAGCTGA AGATATTCAA GTGGTTTTGC ACCCCCAAAG CACCATACAT TCAATGGTAC AGTACAAAGA TGGCTCTGTA ATTGCGCAAA TGGGCAATCC AGATATGCGT ACTCCAATAG CCCATGCTTT GAGCTTTCCA GAACGTATTG AATCAGGCGT AGCACCGCTA GATTTTTTTA ATACTCCCTC TTTTGAATTT CAACCCGTTG ATTTTGAACG ATATCCTAAT CTGGAACTTG CAATTGAAGC GTGTAAGCAA GGTCAAGCTG CTTGTACTGC GCTCAATGCT GCCAATGAAA TTGCTGTTGC TGCATTTCTA GACGAAAAAA TAAAATTTAC CGATATTTAT AAAATAAATG AAACTTCTGT GAAAAAATTT GTCTCACAAA AGGTAGATAA TATTAATGAG GTTATTGCCC TAGATGAGCA AGCGCGTTCA TTTGCACAAA CATTGTTAGC AGATTTTTTG CAAACTGAAG CGCTATCGCA AAAGGGTAAT AAATAA
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Protein sequence | MSKRQLCILG STGSIGCSTL DVVRLHPERF QVISLAAYTS VDVIFEQCIE FKPQQVVLVS SEHAALLTQK LNDANVSNIT VLSGEQALID IAECQNSDTV MASIVGASGL LPTLAAVNAG KRVLLANKEA LVTSGAIFMA AVKASGAELL PIDSEHNAIF QCLPSQQQAE IGECQLLANG ISKILLTGSG GPFRTRAIDT LESVTPSQAC AHPNWDMGRK ISVDSATMMN KGLEFIEAKW LFNVEAEDIQ VVLHPQSTIH SMVQYKDGSV IAQMGNPDMR TPIAHALSFP ERIESGVAPL DFFNTPSFEF QPVDFERYPN LELAIEACKQ GQAACTALNA ANEIAVAAFL DEKIKFTDIY KINETSVKKF VSQKVDNINE VIALDEQARS FAQTLLADFL QTEALSQKGN K
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