| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1177 |
|---|
| Symbol | |
|---|
| ID | 3522704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1200697 |
|---|
| End bp | 1202493 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637283641 |
|---|
| Product | acyl-CoA dehydrogenase family protein |
|---|
| Protein accession | YP_267920 |
|---|
| Protein GI | 71282231 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.158836 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAGT ATAAAGCACC GATCAGAGAT ATTAAGTTTG TTATGCAAGA ATTACTTGAT
TGCGATAATC ATTATCAAAA GTTAGGTTAT GAAGATGCTA GTTTAGATAT GGTTGACGCC
ATAATTAGCG AAGCGGCAAA ATTCACTGAA CAAGTTATTG CCCCTATCAA TCAAAGTGGT
GATGAACAAG GTTGTACTTG GACAAATGGT GAAGTCACGA CGCCTGATGG TTTTAAAGAG
GCTTATCAAC AATATGTTGA AGGTGGTTGG CCAACATTAG CACAAAATGT AGATTTTGGT
GGTCAAGGTT TACCGCATTC ATTAAATACT GCAATTACAG AACTTTTCTC TAGTGCGAAC
CATAGTTTCG CTATGTACCC AGGTTTGAGT CATGGAGCAT TAGCAACCAT TGAAGCACAT
GGTAGCGAAC AGCAAAAAAA TCAGTTCATT CCTAAGTTAG TTGAGGGTAG CTGGACAGGC
ACCATGTGTT TAACTGAACC TCATTGTGGT ACAGATTTAG GTATGTTGCG TACAAAAGCC
GAGTTAAACG ATGATGGTAG TTACTCGTTA ACCGGTACTA AAATATTTAT CTCTGCGGGT
GAACATGATT TATCAGACAA TATTGTTCAT ATTGTTATTG CAAGGATCCC CGGTTCCCCT
GAAGGCAGTA AAGGCATTTC GCTATTTATT GTGCCTAAAT TTAATGTTAC TAACGAAGGT
GAAACGAGCG ATCGTAATGC GGTTAATTGT GGCTCTATTG AGCACAAAAT GGGTATCAAC
GCTAACGCAA CCTGTGTGAT TAACTTTGAT GGCGCTAAAG GTTATTTAAT TGGCGAAGTA
AATCGTGGTT TAAACTGCAT GTTTACCTTT ATGAATGTTG CGCGTTTAGG CGTAGCTACT
GAAGGCGTTG CAGCGGCAGA AGCATCATTT CAAGGTGCAT TAGCTTATGC AAAAGACCGA
TTACAAATGC GATCTTTATC GGGTGTTAAA AATCCTGATG GACCGGCAGA TGCAATCATA
GTTCATCCTG ATGTTCGTCG TATGTTATTA ACGCAAAAAT CTATTGCAGA AGGAGGTCGA
GCACTGATCG CCTATTTAGC ACAGTTAGTA GACATTGGTC ATGCGAGTAC CTGCGAAGAA
GAAAAAGCAA CGGCAGAAGC TAAGCTGGCT TTATTAACAC CTATTGCTAA AGCTTTCCTC
ACAGAGCTTG GTTTAGAATG TACTAGTCAT GGCGTGCAAG TATTTGGTGG TCATGGATTC
ATCAAAGAGT GGGGCATGGA ACAACTAATG CGCGATACAA AAATTAGTTG TTTATATGAA
GGTACTACAG GGATTCAAGC ATTAGACTTA TTAGCGCGAA AAATCTTGGG CTCAAAAGGA
AAAATTCTTA AACCTTTCGG TAGTGAAGTT ACTAAGTTCT GCTTAGAAAA TGCTGAAGAC
GATGCTATGC AAGAGTTCAT TCAACCTATC ATGAGTTTTG GTGGTGATTG GCAGAAAATG
ACAGAAAAAG TTGGTGAAAA AGCAATGCAA AACCCAGACG AAATTGGTGC TGCATCTGTT
GATTATTTGA TGTATTCAGG TTATTTAACC CTCGCTTACT TCTGGGCTAA AATGGCAAAA
GTTGCGCAAG ATAAGCTCAA AGAGGGTTGT GATGATGAAG CTTTTTATCA AGCAAAAATT
AAAACAGCAC GTTTCTATTT TCAACGTATA CTGCCACGTG CCAATGGCCA TGCCGCTTGT
GTTGAAAATG GTGCAGAATC GATGATGGCA CTCGATGCAG ATGATTTTTC TTTCTAG
|
|---|
| Protein sequence | MPEYKAPIRD IKFVMQELLD CDNHYQKLGY EDASLDMVDA IISEAAKFTE QVIAPINQSG
DEQGCTWTNG EVTTPDGFKE AYQQYVEGGW PTLAQNVDFG GQGLPHSLNT AITELFSSAN
HSFAMYPGLS HGALATIEAH GSEQQKNQFI PKLVEGSWTG TMCLTEPHCG TDLGMLRTKA
ELNDDGSYSL TGTKIFISAG EHDLSDNIVH IVIARIPGSP EGSKGISLFI VPKFNVTNEG
ETSDRNAVNC GSIEHKMGIN ANATCVINFD GAKGYLIGEV NRGLNCMFTF MNVARLGVAT
EGVAAAEASF QGALAYAKDR LQMRSLSGVK NPDGPADAII VHPDVRRMLL TQKSIAEGGR
ALIAYLAQLV DIGHASTCEE EKATAEAKLA LLTPIAKAFL TELGLECTSH GVQVFGGHGF
IKEWGMEQLM RDTKISCLYE GTTGIQALDL LARKILGSKG KILKPFGSEV TKFCLENAED
DAMQEFIQPI MSFGGDWQKM TEKVGEKAMQ NPDEIGAASV DYLMYSGYLT LAYFWAKMAK
VAQDKLKEGC DDEAFYQAKI KTARFYFQRI LPRANGHAAC VENGAESMMA LDADDFSF
|
|---|
| |