| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1009 |
|---|
| Symbol | |
|---|
| ID | 3521960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1029980 |
|---|
| End bp | 1031440 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637283474 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_267758 |
|---|
| Protein GI | 71281488 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1639] Predicted signal transduction protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.26696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATC ACCAACATCC TCAAACAACA ACGCAATGGA TTGATCTTAT AGCCAATAGC
GAATTACCTG CTATAACTTC CACTGCTAGG ATGTTAGATA AATTTTCTAA CGATGATAAG
TCATCGCTAC CAAAATTAAG TGAAGCGATT TTGCACGATC AAGGGCTCTC TTCATGCTTG
CTTAAAGTCG CTAATAATAT TCAACACATT AGTATTAACA AAGTCACCAC CGTCTCTCGC
GCATCTGTAG TTCTTGGTAT TCAATCCGTT AAGAACATTT GCTTAACAGC AAAGTTAGTC
TCTAGTTTAT TAGCCTCGAA AAGCCTTGAT ATTAATGTTT ATGAACAGTT GACCCAACTT
ATGGCTAATT CATTTTATGC TGGTATGTTA GCTAAAATGA TGGTGCCTAA TTATAGTGAG
GAGATACAAG AGGAAGTATA CCTTGCAGCT ATGTTGTATC GTATAGGTGA AAGTGCATTT
TGGAGCGCTG GTGGTGATGT AGCTAAAAAA CTGGCAAATT ATGAAGCCAA GTCACCACAA
GATTTTAATC AATATTGTCG GAAAGAAATG GGTACTAATT TTAGCGAATT GAGTAAAGGG
CTTGCTGGTA CTTGGAACTT GAGTGATTTA TTAATCAAGG CTCTCGACCA ACCAACCACG
CGTACTGATG AAGTGAAAGT TATTTACTTT GCTGACAAAC TCAGCGCTAT TATCGCAAAA
CCAGAAGGCT GTGAGGAAGA CTATCATAAA TTGCTTAAAG AAATAGCCTA TATAGTGGGT
ATCTCAGTAA GGCAATTAAC GGTAAGAATT GAGCATACGC GCGAGCAGGC TGAGAAGTTA
CTGTCATCTT ATGGTGCTGA AATATTAACA GAGCGAATTA ACAGTTTACC AACCGCCGAA
GACTTTAAAT CCCTTGGAGG GGACTTTGAT ACTAGAGAGG TTGTCAGTAA GGATAAAGCG
TTACTAAATG GTTTTATGAA GCTAACAAAG TTAATTCAAA ACAGTAAGGA CTTTAATGAA
TATTTACAAT TAACACTGGA AAGTTTAGCC CTTACCTTTG CCTTTGACCG TAGTTCTTTT
TTAATGCTAG TAGATGATAG AGCTCGAGTT AAATCACGGT TAGTTGTTAA TAAAAATGCT
CAAGACGATG CTAGTAAAAT TAATATTGAT ATCAAGCACA GTGATAATGT TATTGCTAGA
GTGATTAGTA CGGATACAGC AGCGTTAATC AATGACCATC AAGAAATTCG TTGGCGAGAT
TTAGTCACCG AAGAGATCAG TGAGGTAATT GTGGAAGGCG CTATAGCTTT TGTTCCTGTA
AAAATAGGCG GTAAAGCAAT AGGCGTGATA TGTTTGCAAT TACTCAGTCC AGATCAAAAG
ATAGAGACAC AAGATTTCCA ACAAATATGT GCCTTTATAG ATCACCTTAA CATGTGTTTA
ACCATGATAA AGTACAGTTA A
|
|---|
| Protein sequence | MTNHQHPQTT TQWIDLIANS ELPAITSTAR MLDKFSNDDK SSLPKLSEAI LHDQGLSSCL
LKVANNIQHI SINKVTTVSR ASVVLGIQSV KNICLTAKLV SSLLASKSLD INVYEQLTQL
MANSFYAGML AKMMVPNYSE EIQEEVYLAA MLYRIGESAF WSAGGDVAKK LANYEAKSPQ
DFNQYCRKEM GTNFSELSKG LAGTWNLSDL LIKALDQPTT RTDEVKVIYF ADKLSAIIAK
PEGCEEDYHK LLKEIAYIVG ISVRQLTVRI EHTREQAEKL LSSYGAEILT ERINSLPTAE
DFKSLGGDFD TREVVSKDKA LLNGFMKLTK LIQNSKDFNE YLQLTLESLA LTFAFDRSSF
LMLVDDRARV KSRLVVNKNA QDDASKINID IKHSDNVIAR VISTDTAALI NDHQEIRWRD
LVTEEISEVI VEGAIAFVPV KIGGKAIGVI CLQLLSPDQK IETQDFQQIC AFIDHLNMCL
TMIKYS
|
|---|
| |