Gene CPS_0594 details

Gene Information

• Locus tag: CPS_0594
• ID: 3518931
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 597300
• End bp: 599240
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637283059
• Product: polysaccharide biosynthesis protein
• Protein accession: YP_267344
• Protein GI: 71278441
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1086] Predicted nucleoside-diphosphate sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCTTTAA TTCAGTCTGT TTTGAGTTTG CCGCGTGCTT ATAAACGTGC CATCTCGTTG 
TTGATAGATT CTATCTTTTT ATTTTGTGCT TTTTGGTTAG CATTATTTAT GCGCCTTGAT 
AGCTTCTCCC CACTATTCGA CCAAGGTTAC TGGCTAGTGT TTTCCTGCTC TTTACCGCTA 
AGTTTATTAG TTTTTGTAAA GCTGGGCCTT TATCGTGCTG TATTACGTTA TATGAATATG 
CAAGCGGTTT GGGCTATAGC ATTGGGCAGT ATTTTTTCTG CCATGTTCGT TATTGGGTTT 
TCTTTTTTGT ATACCGCAGG CATTCCTCGA ACTGTTCCTT TTATTTTCAT TAGCTTATGT 
TTGATATTGA TTGGCGGCTC AAGAGTTTCA GTAAGAGCGG TAATTAGTCA TCAACGCTGG 
CATAAAAAAG CCTCTGTATT GATATATGGC GCAGGTTCTT CAGGCCGTCA ATTAGCGACG 
GCTTTATCAC AAGGTCCTGA ATATCATGCG GTGGCTTTTA TTGATGATTA TAAAGCGCTT 
CAAGGACAGA TTATTCAAGG CATTCCTGTT TATTCTCCAG AAGAAATTTC CCACGTAGTT 
GAAAGAAAAA CCGTTCAAAA AATATTATTA GCTATACCAA GCGCCTCAAG AGCAAGGAGG 
AAACAAGTGT TGGCTAAAAT TGATTGTTTA GGTATTCAGG TATTAACCAT TCCAGGTATG 
GCTGATATTG TTGAAGGCAA GGCTAAACTT GAAGAGTTTA AAGATGTTGG TGTTGAAGAT 
TTATTAGGGC GTGATTCTGT AGAGCCAAAA CCAGAATTGA TGAATGCCGA TATAGCCGAT 
AAAGTAGTTA TGGTTACTGG GGCCGGTGGC TCTATTGGCT CTGAATTATG CCGTCAGATA 
ATTCGATTAA AACCTACTAA GCTTGTGTTG TTTGAGTTAT CAGAATTCGG CTTGTATACC 
ATTGATAAAG AACTTAATGA ATATAAGCAG CAACATGATT TAGCTGTTGA AGTATTGCCA 
CTTTTGGGGT CAGTACAAAG GGTTAATCGC ATTGAAACAG TAATGAAAAG TTTTGCCGTA 
CAAACGGTTT ACCATGCAGC AGCATACAAG CATGTGCCAT TGGTTGAGCA TAATGTTGTT 
GAAGGAGTTA GAAACAATGT TTTTGGTACT TATTACGCAG CGCGTGCTGC GATAAATGCC 
AATGTTGAGA CCTTTGTTTT AATCTCCACC GATAAAGCTG TTAGACCTAC TAATATCATG 
GGTACCACTA AGCGTATGGC TGAGTTAGTA CTACAGGCGT TAGCTAAAAC ACAACATTCT 
ACGCGCTTTT GTATGGTGCG TTTTGGGAAT GTATTGGGTT CCTCTGGTTC AGTAGTACCG 
CTGTTTAGAA AACAAATTAA AAATGGTGGT CCGGTAACGC TAACTCACCC TGACATCACT 
CGTTATTTCA TGACTATTCC TGAAGCTTCG CAACTAGTTA TTCAGGCTGG CGCTATGGGT 
AAAGGTGGCG ATGTCTTTGT GCTTGATATG GGGGATGCGG TAAAAATATA TGACTTAGCC 
AGTAACATTA TTCACTTAAG TGGTTTCTCC GTTAAAAGCG CTGAATTACC TGATGGAGAT 
ATAGAGATTA AATGTACGGG TTTGAGACCA GGCGAGAAAC TCTATGAGGA ACTTCTTATA 
GGTGATAACG TTTCAGGGAC TTCACATGAG CGTATTATGA CTGCACAAGA AGTGATGCTT 
GATTGGGATG AGTTAGAGGC ATTGATATCG AGGCTTGACG ATGCTTGTCA TGCGTTTGAT 
CATGAATTAA TTCGTGAAAT CTTACTCAAG GCGCCAACAG GTTTTAATCC TACGGATGGA 
ATTTGTGATT TAGTCTGGCA GCAGAAAAGT ACTTTACAGC AATATACGGC TGATATTATT 
GAACTGAAGG TTGCCACTTA G 

 

Protein sequence

MSLIQSVLSL PRAYKRAISL LIDSIFLFCA FWLALFMRLD SFSPLFDQGY WLVFSCSLPL 
SLLVFVKLGL YRAVLRYMNM QAVWAIALGS IFSAMFVIGF SFLYTAGIPR TVPFIFISLC 
LILIGGSRVS VRAVISHQRW HKKASVLIYG AGSSGRQLAT ALSQGPEYHA VAFIDDYKAL 
QGQIIQGIPV YSPEEISHVV ERKTVQKILL AIPSASRARR KQVLAKIDCL GIQVLTIPGM 
ADIVEGKAKL EEFKDVGVED LLGRDSVEPK PELMNADIAD KVVMVTGAGG SIGSELCRQI 
IRLKPTKLVL FELSEFGLYT IDKELNEYKQ QHDLAVEVLP LLGSVQRVNR IETVMKSFAV 
QTVYHAAAYK HVPLVEHNVV EGVRNNVFGT YYAARAAINA NVETFVLIST DKAVRPTNIM 
GTTKRMAELV LQALAKTQHS TRFCMVRFGN VLGSSGSVVP LFRKQIKNGG PVTLTHPDIT 
RYFMTIPEAS QLVIQAGAMG KGGDVFVLDM GDAVKIYDLA SNIIHLSGFS VKSAELPDGD 
IEIKCTGLRP GEKLYEELLI GDNVSGTSHE RIMTAQEVML DWDELEALIS RLDDACHAFD 
HELIREILLK APTGFNPTDG ICDLVWQQKS TLQQYTADII ELKVAT