Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0578 |
Symbol | |
ID | 3521273 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 579384 |
End bp | 580511 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637283043 |
Product | polysaccharide biosynthesis/export protein |
Protein accession | YP_267328 |
Protein GI | 71280804 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.809222 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAATAT CCTCTAAAAA AGTAATTGTC TCACTAGCCT TATTGTTATT GAGCGGCTGT AATATTATCC CTGGCAGTCA TATGGAAGGC GTTGATGTAG AACCTGAGAC ATCTACACTT GAACAAGACC TCTCAAATAT AAATATCTCT GTTATAGACT CTTCATTAAT ATCTCGATTA AAAGACAGCC AACAAACTTA TTCTCAAGCT AAAAAATATA CACCAGTAGT TACAGATACG TATGATTACG TGCTGGGTGT TGGTGATGTT TTATCTATTG GTGTTTGGGA CCATCCAGAA TTAACTATTC CTGCCGCAGT ACAACGTACC GCAGAATTTG ATGGTTTTAG AATTCAAGCC GATGGCACTA TCACCTATGC GTATGCTGCC AATGTACCTG CAGCGGGTAA AACAATCAGA GAATTACACA ATGTTTTAGT AGCAAAGCTC AGTGAGGTTA TTGAAAAACC ACAATTAGAC CTTAAAGTGG TTGGCTTTAA GAGTCAGCGA ACGTATGTTA CTGGCGAGGT GAAAAGACCT GGTGTTTTCG CTATCAGTGA AATACCTTTA ACGTTAATCG ATGCACTCAA CCTCGCGGGT GGTTTAAGTG AAAGAGCTGA TTGGCGCACG GTTAGTTTTA CTCGAGATAA TCAAGTACAA ACCATCAAGT TAGATGATTT TTATACCAAG GGTGATATTT CTCAAAACCG CTTATTAAAA CATGGTGATA TTATTCATGT TAATCGTACT GATAATCAAA AAGTATTTGT ATTGGGTGAT GTAAGCAAAG CTGGCAGTAT TGAAATTAAC CGTTATGGCT TAAGCCTTGC GGAAGCGTTA AGCGACGTAG GCGGTTTAAA TGAAAGAACC GCCAATGCTA ACGGGGTATT TGTGTTGCGT AAACGCCCAG ATAATGAAGA AGGCATTATT GCCGATGTGT ATCAATTGTA TGCACAAAAT GTAGTGGCAC TGGTGTTAGC TGATCAATTT AAATTGCAAC CGCGTGATAT CGTTTATGTG ACCACTGCAC CTATTGCACG TTGGAATCGT TTGATTAGCC AATTAGTACC AACAGTGCAA GCACTGGAAA GTATTTCAAC GATTAAAACT CAAGGAAACT TTTTCTAA
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Protein sequence | MLISSKKVIV SLALLLLSGC NIIPGSHMEG VDVEPETSTL EQDLSNINIS VIDSSLISRL KDSQQTYSQA KKYTPVVTDT YDYVLGVGDV LSIGVWDHPE LTIPAAVQRT AEFDGFRIQA DGTITYAYAA NVPAAGKTIR ELHNVLVAKL SEVIEKPQLD LKVVGFKSQR TYVTGEVKRP GVFAISEIPL TLIDALNLAG GLSERADWRT VSFTRDNQVQ TIKLDDFYTK GDISQNRLLK HGDIIHVNRT DNQKVFVLGD VSKAGSIEIN RYGLSLAEAL SDVGGLNERT ANANGVFVLR KRPDNEEGII ADVYQLYAQN VVALVLADQF KLQPRDIVYV TTAPIARWNR LISQLVPTVQ ALESISTIKT QGNFF
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