| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0546 |
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| Symbol | |
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| ID | 3521183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 543186 |
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| End bp | 544955 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637283011 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_267304 |
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| Protein GI | 71280714 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATAAGA ACATTTTAAC GTTTTTCATC ATTATCAGCT TTTTTACAAC GGCTAATGCA
AGTGCTGATT TTGATGCAAA GTTGTCTCTA GCAGATAGTA TTAGAAGTAG TAAGCCGCAA
GAATTTTCTG TCATAATTAA AGGACTAAAC CAAGAAAAAA GCAAGTTATC AACCGCCCAA
TATCAACACC TTAAGTACCT CAATACCTAT TCATTAATGT TTCAAGGAAA GCTTGATGAA
GCTATCTATT TAGCCAAAGA AATTATCATT TCAGATGCTA ATGAAACGTT AAAGTTCAGA
GCCAAAATCA GTCTAATGAA TATATTTGCT AATAGGCAGA ATTGGACGGA AGGGTTAACC
AATTTATCAA GCCTCCTAAA AGACCTACCC TCAGTAAAAA ATGAAGACTT TCATCAATTG
GCCCTAGTGG CGGCTAGCAT GTTTTATAAT CAACTTGGGC AATATCAACT AGCTCTTTCT
TATGCAAAGA AGATAGAGGC TAGAGCGGGC CAAAATAGAA ATCAATGTCT TGCAAAAGGC
TTTATCGTTG AAGCTTTATC AAAGTCACAT CAATTATCGA CTAACGACCC CATCATTGAA
CAAGCTATTG AAGTTTGTCG TAAAAATAAT GAAATTCTTA TGGTGAGTTT TATTAATTCT
CATATTGTTA GAACATATAT TTACAACGAG CAATTTATAA AAGCGATCGA ATTGTTAAAT
GCAACTCTAC AGTCAACCGT TAATATCAAT TTCTCTAGGA TAACAGCTGA ATATTACTCT
TTATTAGCAA ATGCATATTG GCAAACCAAC GAATTAGCTA AAGCACAATA CTTTGCCCTA
AAAACACTAG AAAGTAAAAA TCAATTAAGC TCCCGAAAAG CAAAAATATT AGCTAACCAC
CTGCTTTATA AAATATATAA ACATCAAAAT AATTTAGAGC TCGCACTAAG TTATTTTGAA
GTTTATAGCG AATTAGGTAA AGAGCACCTA AAGGGCGAAA AAGCCAAGCA CTTCGCATTC
CAACTGGCAG AGCACCAGAA TATTGAACAA GAAAGCAAGA TTAAATTACT CAATGAAAAA
AATTCTTTAT TACTCAGTGA CCAAGCATTA AGTAAGGCCA AAGTTGTCAA TATTCAGTTA
ATGATTTCTA TCTTAATGGT GACGCTCGCT TTATTAGTAT TATGGGGAGC TCGTTTGTTA
AAAGCACATA AACGTGTAAG AGAATTGGCC GAATATGATC CGTTAACCGG AATTTATAAT
CGAGGTCATT TTACCCATGT GACCAATAGC GCCTTAAAAT ATTGTAAAAA TGCTCAACAA
GACTTGTCTG TGATTATGTT CGATTTAGAT CACTTCAAAA AAGTTAACGA CTCTTTTGGT
CATGCCTGCG GTGACTGGGC ATTAAAAGAG ACCATAAAAG TTTGTCAACG TATTGGCCGT
AAAAATGATA TTTTTGCCCG CTTAGGTGGT GAAGAATTTT GTTTGGTATT AACATGTTGT
ACTATTGATG TGGCAATGCT GCGCGCCGAA GCTTGTCGTG CGGCAATTGA AGAAATAATT
ACCGAAGAAT CTGGGAATGA TTTTTCAATC ACTGCTAGCT TTGGCGTAAC TGATATCAAA
CGTTCTGGAT TTACTTTAGA CAAGCTATTA GCGGATGCGG ATATGGCCGC TTACGCATCA
AAAAATGCAG GCCGTAACAG AGTCACTCTG TTCGAAGTAC CTTACACAGC TAAAGCAAAT
AAATTAGATG ACTCATGGAA CTATAACTAA
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| Protein sequence | MNKNILTFFI IISFFTTANA SADFDAKLSL ADSIRSSKPQ EFSVIIKGLN QEKSKLSTAQ
YQHLKYLNTY SLMFQGKLDE AIYLAKEIII SDANETLKFR AKISLMNIFA NRQNWTEGLT
NLSSLLKDLP SVKNEDFHQL ALVAASMFYN QLGQYQLALS YAKKIEARAG QNRNQCLAKG
FIVEALSKSH QLSTNDPIIE QAIEVCRKNN EILMVSFINS HIVRTYIYNE QFIKAIELLN
ATLQSTVNIN FSRITAEYYS LLANAYWQTN ELAKAQYFAL KTLESKNQLS SRKAKILANH
LLYKIYKHQN NLELALSYFE VYSELGKEHL KGEKAKHFAF QLAEHQNIEQ ESKIKLLNEK
NSLLLSDQAL SKAKVVNIQL MISILMVTLA LLVLWGARLL KAHKRVRELA EYDPLTGIYN
RGHFTHVTNS ALKYCKNAQQ DLSVIMFDLD HFKKVNDSFG HACGDWALKE TIKVCQRIGR
KNDIFARLGG EEFCLVLTCC TIDVAMLRAE ACRAAIEEII TEESGNDFSI TASFGVTDIK
RSGFTLDKLL ADADMAAYAS KNAGRNRVTL FEVPYTAKAN KLDDSWNYN
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