| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0471 |
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| Symbol | |
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| ID | 3519351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 472626 |
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| End bp | 474746 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637282936 |
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| Product | type IV pilus biogenesis protein PilQ |
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| Protein accession | YP_267229 |
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| Protein GI | 71279149 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.986864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTATTTA ATAAAATGAA AAATTATAAA GGCTTTACTG CTGTAAAAGA ACTCTGGCTT
TTGAACCTAT TTATATTGTC TGTATTCACG CTATCGTTTT CAGTAAGTGC TGCGAGCAAT
GATGTTTCTA TAAATAATAA TGAATTGATT GGTATCTCAT ATAACACCAT TCAAAGTGAT
CAAATTGTAG TTGTTTTTAG TTTTACAAAA AACATAACTT CCTTACCTAT AGTTAAAACA
TCAATGACTC CTGCGTTTGT AGAAGTGACG TTTGACGCCA ATACTTATGG TAAAGATCTA
ACTGAGACTT TAATTAACCA TGCAGGCATA AAAGGAATCA ATTTAGATGC TAAAACTGGC
AAAGTTGTAG CATTAATTAG TCTAGAGAAA CTGGCTGTTT TTGATGTTTC ATTGAATAAT
GAAAAAGAAT TTTCTATTAC TTTTAACTAT GGAGAATCAG CTGAAATTGT TGAAACATTA
AGCCCTGCAG GTGATGATTT TATTAATTCT ATAGAGTCAA TCGACTTTAG ACTAAATGGT
GATAATGAAG GGCAAATATT AGTTTACCTA AAAGACAGTA TGTTAGCTGC TGACGTAAAT
GATAAATTAG GCAAATTAAA TGTCGAATTT CATAATACTG AAATTATTGA CGACTTACTT
TATAAGTTAG ATGTTACTGA CTTTGGTACA CTCGTTACCA GTATTGAAAC GTTTAAAGAA
GGACGGAATG CACGCTTAGT CATTGACGTT GAGAGTGGTT TTATTTTCAC TCAAAAACAA
GAAGAAAACT TATTCATATT AACGGTAAAG AAAAAACCTG AAAAAGCCCC TACCTACCTA
GGAGACACTG ATGACTTTAC TGGTCGTAGT ATTTCATTAA GCTTTCAAGA TATTCCTGTT
CGAACTGTTT TACAGATAAT TGCGGATTAT AATGAATTTA ATTTAATTAT CAGCGACACC
GTTACAGGTA ATATAACGCT TCGTTTAGAT GGCGTACCTT GGGACCAGGC ATTAAGTATT
ATCTTAAAAG TGAAGGGCCT AGATAAGCGC ATGCAAGGTA ATATCTTAAT GGTCGCACCG
AGTGATGAAC TGGCTGCCCG AGAAGCTCAA AGCCTGCAAG CAAAGCAACA AGTTGAAGAG
TTGGCCACTT TATATTCTGA ATATCTGCAA ATTAATTATG CAAAAGCTGC TGAATTTTCA
GAACTGATTA AAAATGAAGA TACCAGTATC TTATCTGATC GCGGCAGTGT TTCAGTAGAT
GAACGTACTA ATACACTATT AATACGCGAT ACAGCTAAGA GTATTGAAGA TATCAAACGG
ATGATCACTA TTCTTGATGT ACCTGTTCGA CAAGTGGTGA TTGAAGCTCG TATGGTAACT
GTCAAAGATA ATATGAATGA AGAGTTAGGT ATTCGTTGGG GAGTGACTAA TACGGATGGT
GAATTTGCTA CTTCAGGTTC TATTGAAGGA GCTAGTAGCG CCAACGGTAC AAGAGGAGTA
ACCACCCCAG GAGTGGGTCA AGTCCCTACT ATAGGTGATG GCCTAAATGT GAATCTTCCG
GTGGCTAATG CTGCAGGCAC AATTGCTTTT CAGGTCGCCC GTTTGGCCAA TGGTACTATT
CTTGATTTAG AGCTTTCTGC ACTTGAGAAA GAAAATAAAG GTGAAGTTAT TGCTAGTCCA
CGCATAACTA CAGCTAACCA AAAGGAAGCT TACATAGAAC AAGGTGTAGA GATTCCATAT
CAAGAAGCGG CTTCAAGCGG TGCAACAGCA ACACAATTCA AAAAAGCAGT GTTGAGTTTA
ACAGTAACGC CACACATTAC CCCTGATGAT AAAATCATTT TAGATTTAGT AGTGACACAA
GATACTATAT CGGATATTAC AAGTGGTTTT GCACCGGCGA TTGATACTCA GCGTATTGGC
ACTCAGGTGT TAGTTAATAA CGGTGAAACA ATTGTACTGG GTGGTATTTA CCAGCAAGCC
ATTATCAGCA CAGTGTCTAA AATTCCAATC TTAGGTGATA TTCCTTACCT TGGTTGGTTG
TTTAGAAATT CAAGTCAGCT AAACGAGAAA AAAGAATTAT TAATTTTCGT TACACCTCGA
ATTGTAACTG AACACTTTTA G
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| Protein sequence | MLFNKMKNYK GFTAVKELWL LNLFILSVFT LSFSVSAASN DVSINNNELI GISYNTIQSD
QIVVVFSFTK NITSLPIVKT SMTPAFVEVT FDANTYGKDL TETLINHAGI KGINLDAKTG
KVVALISLEK LAVFDVSLNN EKEFSITFNY GESAEIVETL SPAGDDFINS IESIDFRLNG
DNEGQILVYL KDSMLAADVN DKLGKLNVEF HNTEIIDDLL YKLDVTDFGT LVTSIETFKE
GRNARLVIDV ESGFIFTQKQ EENLFILTVK KKPEKAPTYL GDTDDFTGRS ISLSFQDIPV
RTVLQIIADY NEFNLIISDT VTGNITLRLD GVPWDQALSI ILKVKGLDKR MQGNILMVAP
SDELAAREAQ SLQAKQQVEE LATLYSEYLQ INYAKAAEFS ELIKNEDTSI LSDRGSVSVD
ERTNTLLIRD TAKSIEDIKR MITILDVPVR QVVIEARMVT VKDNMNEELG IRWGVTNTDG
EFATSGSIEG ASSANGTRGV TTPGVGQVPT IGDGLNVNLP VANAAGTIAF QVARLANGTI
LDLELSALEK ENKGEVIASP RITTANQKEA YIEQGVEIPY QEAASSGATA TQFKKAVLSL
TVTPHITPDD KIILDLVVTQ DTISDITSGF APAIDTQRIG TQVLVNNGET IVLGGIYQQA
IISTVSKIPI LGDIPYLGWL FRNSSQLNEK KELLIFVTPR IVTEHF
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