| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0394 |
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| Symbol | |
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| ID | 3518710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 399266 |
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| End bp | 401488 |
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| Gene Length | 2223 bp |
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| Protein Length | 740 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637282859 |
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| Product | response regulator/GGDEF/EAL domain-containing protein |
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| Protein accession | YP_267152 |
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| Protein GI | 71278687 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.273558 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGCAT CAGAAAATTC CCATGATGAC TTTTTATTCA TCGATGATAG TGATGAAGAC
GAGATTTTAG CGTTTGGCAG TAATGAAACT TGGCAAGTTC TAATTGTTGA TGATGATCCA
GAGATTCATT CAGTGACTCA ATTAGCATTA TCAGATCTGG TCGTATTAGG ACGTCGTCTT
GAGTACTTAC ATGCTTATTC AGGTAAAGAT GCTTGTCAAC TAATTGAAAA TAATGATGAC
ATTGTTCTAG TACTACTCGA TGTAGTTATG GAAACTGATG ATGCTGGCTT AAATGTTGTC
AAATATATCC GAGAAACATT ACAGCGAAAA GATATCCGCA TTGTTTTACG TACCGGGCAA
CCTGGTTATG CCCCCGAAGA AAGTGTCATA AAAGAATATG ATATCAATGA TTATAAGACA
AAGACCGAGC TAACTCGTCG AAAGTTAGTC ACTACCGTTT TTGCCGCTAT TCGCTCTTTC
CAACAAATAG CTACTGTCAA TGAGAACCGT CAAGGTCTTG AGAAAATAGT TTCTGGTGCT
ACCGAATTAT CGTCACAGCA CTCTCTCCCT ACTTTTAGTC AAAGTGTGTT ATCCCAATTA
AGAACCCTCA TAAGTGATGA TATATCTGCA GTTTTTTGCG CTAGAGGCCA AGGTATTATT
GATAATATTG ATGACTTGAG TTTTTATGTT TTAGCACAAA TTGGCTTTGA TGATAGCTTA
CTGAACCAAA AAATTGATAC GTTGCAAGAT AACCAAGCAA ACAAACAAGT AAAAGCGTGC
TTCTTACAAC AAAAACATCA ATATCTTGAT GATAGCCTTG ATCTTTATGT TGCTAAAGGT
GATTACCGTG CAGTCATTCA TGTCAGGCTT TCTAGCCCGT TAACCGAAAT CCAAACTCAA
CTATTGAATG TATTTTTAAC CGGAGTCGCT GTAGGTTATG AAAATGTCCA CCTATTTCAA
AAGCTCACCA ATGCGGCTTA CAGAGATTGG TTAACTAACT TACCGAATCG TCTTGAATTT
GTGCGCTTAC TTGATAGTTT TGCTCAAAAT GATTGTAAAA ATACGGTTGC AGCCTTAATT
GATATAAATC ATTTCAGTGA TATCAATGAT GCCTTAGGAC AAGATATTGG CAATAAGCTG
CTATCTGCAG TAGGTCAACG GATTCAAAGT ATAGGTTCTG ACTGCCAACT GGCACGAGTA
GGTGCTGACG TTTTTGGCAT TATTGGTCCG GCCGATTGTT TAACCCCTGA AAGTTTAATC
GCTTTATTCC ACCAGCCTTT TGCTGCAGGT GAACAACACC TTCCCATCAA TGCTTGTTTT
GGTTTATGTA CTAAAGAACA TGCTCAAAGC AGCGGCGTAC AAGTATTGAA TCAAATTAAT
ATTGCGTTGA ATATTGCCAA AAAGAATCGT TTAGAACATT TTGCTTATTA TCACTCAGAT
ATAGAAGATC AAATGCAATG GCGCCTAAAC ATGATTCGCC AACTTCGTAA TGATTTTGGA
AATAACTGCC TTGAACTCTG GTATCAACCA CAATTATCAT TAACTACAGG TAAAGTTATT
GGTGCTGAGG CTTTACTGCG CTGGCGTACT GCTGATGGTA AATTTGTTTC TCCTGCTGTT
TTTATTCCTT TAGCTGAATA TTCAGGATTA ATTATTGAAA TCGGAGACTG GGTTATTAGT
CAGGCATGTA AGCAACTAAA AGTATTAGAA GAAAATTTCT CTGACCTTAG TATTTCAGTC
AATGTATCTA TCCCACAGTT TAGACAAGAT AATTTTGTCG ATAATATAAT AAACACAATG
ACTCAGTATG GAATTAAGCC AAACAAACTT GAACTAGAAA TTACTGAAAA CATTTTAATG
GATGAACCAC AAATCATCAT TGATGCGTTA ACCAAGTTAA AAGCTCAAGG AATAAGCATA
GCACTCGATG ATTTTGGTAC TGGCTTCTCT TCATTAAGTT ACTTGCAAAA ATTGCCTCTA
AATCGCCTAA AAGTTGATCG CGCTTTTGTC ACCGATATTA ATAAGGAAGG TCAGTCAGTT
ATTGCTGAAA CGATTATTAA TTTAGGTAAA AAGATGCAAC TAAAAGTCAT TGCTGAAGGC
ATTGAAGAAA TTGAACAACA AGAACGTTTA ATTGAATTAG GTTGTGATGA GGTACAAGGT
TTCTATTATG CTAAGCCAAT GCCGGCAGAT GAGTTCATCA ATTTTTTACA TCAACAAAGT
TAA
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| Protein sequence | MQASENSHDD FLFIDDSDED EILAFGSNET WQVLIVDDDP EIHSVTQLAL SDLVVLGRRL
EYLHAYSGKD ACQLIENNDD IVLVLLDVVM ETDDAGLNVV KYIRETLQRK DIRIVLRTGQ
PGYAPEESVI KEYDINDYKT KTELTRRKLV TTVFAAIRSF QQIATVNENR QGLEKIVSGA
TELSSQHSLP TFSQSVLSQL RTLISDDISA VFCARGQGII DNIDDLSFYV LAQIGFDDSL
LNQKIDTLQD NQANKQVKAC FLQQKHQYLD DSLDLYVAKG DYRAVIHVRL SSPLTEIQTQ
LLNVFLTGVA VGYENVHLFQ KLTNAAYRDW LTNLPNRLEF VRLLDSFAQN DCKNTVAALI
DINHFSDIND ALGQDIGNKL LSAVGQRIQS IGSDCQLARV GADVFGIIGP ADCLTPESLI
ALFHQPFAAG EQHLPINACF GLCTKEHAQS SGVQVLNQIN IALNIAKKNR LEHFAYYHSD
IEDQMQWRLN MIRQLRNDFG NNCLELWYQP QLSLTTGKVI GAEALLRWRT ADGKFVSPAV
FIPLAEYSGL IIEIGDWVIS QACKQLKVLE ENFSDLSISV NVSIPQFRQD NFVDNIINTM
TQYGIKPNKL ELEITENILM DEPQIIIDAL TKLKAQGISI ALDDFGTGFS SLSYLQKLPL
NRLKVDRAFV TDINKEGQSV IAETIINLGK KMQLKVIAEG IEEIEQQERL IELGCDEVQG
FYYAKPMPAD EFINFLHQQS
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