Gene CPS_0392 details

Gene Information

• Locus tag: CPS_0392
• Symbol: fadA
• ID: 3518581
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 395366
• End bp: 396526
• Gene Length: 1161 bp
• Protein Length: 386 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637282857
• Product: 3-ketoacyl-CoA thiolase
• Protein accession: YP_267150
• Protein GI: 71278811
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0183] Acetyl-CoA acetyltransferase
• TIGRFAM ID: [TIGR01930] acetyl-CoA acetyltransferases; [TIGR02445] fatty oxidation complex, beta subunit FadA

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGAAG TTGTAATTGT AGACTGCATA CGAACTCCAA TGGGTCGCTC TAAGGCCGGT 
GTTTTTCGCA ATGTACGTGC TGAAGCACTA TCAGCACACT TAATGAAACA AATTTTAGTA 
CGTAATCCTG CATTAAACCC AGAAGACATT GAAGATGTTA TTTGGGGTTG TGTGAAGCAA 
ACTAAAGAAC AAGGTTTTAA TATTGCACGT AATGCATCAT TACTTGCTGG TTTACCAAAG 
TCCATTGGTG GCGTTACGGT AAATCGCTTA TGTGGCTCTT CTATGGAAGC GTTACATCAA 
GCAAGTACTA GCATCATGTC AGGACAAGGC GATGTATTCC TTATTGGTGG CGTAGAGCAC 
ATGGGTCACG TACCTATGAT GTATGACGTT GATTTTGATC CAGCACTGAA TAAAAATATC 
GCTTTAGCCT CTGGTAACAT GGGCTTAACG GCTGAGTTAT TAGGTAAACA ACACGGCATT 
ACGCGTGAAA TGCAAGATGC TTTTGGTGCG CGTTCGCATC AAAAAGCGCA TGAAGCACAC 
TTGGCTGGTC GTTGGGATAA TGAAATTGTT GCAACACAAG GTCATGATGC TACTGGTGCA 
TTAACATTAG TAGAGCACGA TGAAGTTATC CGCCCTGAAA CAACGGCAGA AAGCTTATCC 
GCTTTGCGCC CAGTGTTTGA TCCGGTCAAT GGTACGGTAA CTGCCGGAAC TTCATCAGCG 
TTATCAGATG GCGCTTCAGC AATGTTGGTT ATGTCTGCTG CTAAAGCGAA AGAATTAGGC 
TTAACACCAC GCGTTAAAAT TCGTGGTATG GCCGTTGCTG GTTGCGATCC TGCGACTATG 
GGCTTTGGTC CTGTTCCTGC TACCAAGAAA GCACTAAAAC GTGCTGGTTT ATCTATTGCA 
GATATTGAGT TATTTGAATT CAATGAAGCT TTTGCTGCGC AAGCATTATC TTGTGTTCGC 
TCATTAAAAG TGGAAGATAA AATGGATCAA ATTAACTTAA ATGGTGGTGC TATTGCATTG 
GGTCATCCTT TAGGTTGTTC AGGTTCACGT ATCTCAGGTA CGCTGATTAA CTTGATGGAA 
GGACAAGATG TTAATATTGG TTTAGCTACT ATGTGTATCG GCTTAGGTCA GGGTATCGCA 
ACAGTATTTG AACGCGTGTA A 

 

Protein sequence

MNEVVIVDCI RTPMGRSKAG VFRNVRAEAL SAHLMKQILV RNPALNPEDI EDVIWGCVKQ 
TKEQGFNIAR NASLLAGLPK SIGGVTVNRL CGSSMEALHQ ASTSIMSGQG DVFLIGGVEH 
MGHVPMMYDV DFDPALNKNI ALASGNMGLT AELLGKQHGI TREMQDAFGA RSHQKAHEAH 
LAGRWDNEIV ATQGHDATGA LTLVEHDEVI RPETTAESLS ALRPVFDPVN GTVTAGTSSA 
LSDGASAMLV MSAAKAKELG LTPRVKIRGM AVAGCDPATM GFGPVPATKK ALKRAGLSIA 
DIELFEFNEA FAAQALSCVR SLKVEDKMDQ INLNGGAIAL GHPLGCSGSR ISGTLINLME 
GQDVNIGLAT MCIGLGQGIA TVFERV