| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0325 |
|---|
| Symbol | hfq |
|---|
| ID | 3522133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 336486 |
|---|
| End bp | 336737 |
|---|
| Gene Length | 252 bp |
|---|
| Protein Length | 83 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637282790 |
|---|
| Product | host factor-I protein |
|---|
| Protein accession | YP_267091 |
|---|
| Protein GI | 71281661 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1923] Uncharacterized host factor I protein |
|---|
| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAG GGCAGTCTTT GCAAGACCCA TTTTTAAATG CGTTACGTCG TGATCGCATT
CCAGTTGCAA TATATTTAGT TAACGGTATT AAGTTACAAG GACAAGTAGA ATCGTTCGAT
CAGTTTGTAA TTCTCCTTAA GAATACGGTT AGTCAGATGG TATATAAGCA CGCTATATCT
ACCGTTGTAC CTTCTCGCGC TGTTAATACA GCACCAGTAC CTGGCCCAGA CGATCAATCG
TCAGATGCTT AA
|
|---|
| Protein sequence | MAKGQSLQDP FLNALRRDRI PVAIYLVNGI KLQGQVESFD QFVILLKNTV SQMVYKHAIS
TVVPSRAVNT APVPGPDDQS SDA
|
|---|
| |