Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0245 |
Symbol | |
ID | 3520744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 249842 |
End bp | 251278 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637282711 |
Product | sugar transporter family protein |
Protein accession | YP_267012 |
Protein GI | 71280279 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.669235 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTCCT CTGAGCCTGA TAATTCAATT CAAAAACTGC ACGACACTGA AGAAGTTCAA ACTTCATTTT TATACGTACT ATTTATCTCC TCTGTGGCTG CCATCGGTGG GTTTCTATTT GGTTTTGATT CCGGTGTTAT TAACGGCACA GTAACTGCGT TAGGAAATGC TTTTAACGCT AGCGACGTAG CTAGTGGCTT TAATGTCGCC TCGGTACTGT TAGGTTGTGC TGTTGGTGCC TTGATGGCTG GACCGATATC TGATCGGTTT GGACGTAAAC CCATCATGAT TATTACTGCG ATTATCTTTG CCATTAGCGC CTTTGGATCG GGTATATCAA GTTCGTCTGC TGAATTTATT TTTTATCGAT TGATTGGCGG GTTAGGCATA GGTGCTGCAT CAGTATTAGC CCCTGCTTAC ATCGCTGAAG TTGCACCCGC TGCTTTACGA GGCCGTTTAG CTACTTTGCA ACAATTAGCC ATCGTACTTG GCTTGTTTGC TGCTTTTTTA AGTAATTTCC TTATTGCCTC TGTGTCTGGT GGTGCTGAAG CTATGCTGAT GTTAGATATC GCTGCCTGGC GTTGGATGTT TTGGGTAGAG TTATTGCCGG CTGTGCTATT TTTAGTTGGT GTGATATTTA TTCCAGAATC ACCACGTTAT TTAGTCGCTC AAGGTAAGAT TGAAGAAGCC AGAACCATAT TCAAACGCAT AGCAACCGGC GTTGAAAATG AGCAAATTGA AGAAGTTAAA AAATCGCTGC ACGGCGATAA AAAACCTAGC ATCAGGGATC TTTTTATTGA TGGTAAGAAA AAAATTCATC CTATCATTTG GATCGGTATC GGACTGTCGG TATTCCAGCA ATTTGTCGGT ATTAACGTGG TGTTTTATTA TGGAGCTGAG CTTTGGCAAG CTGCGGGTTT TGACGAATCA CAATCGTTAT TTATTAACCT TATCGCAGGT ACAACCAATA TCATTTCTAC TTTCATAGCT ATCGCCTTAG TGGACAAAAT TGGCCGTAAA CCGTTATTAC TGGTCGGTAG TGTCGGCATG TTTATCAGCT TAGGTGCTCT GACCTTTATC TTTGGTACCG GTGGTCTAGA TGAAGCAGGT AAGTTGGCAT TAAGTGATAC GACAGGCACA GTGGCTTTAA TCATGGCTAA TTTATTTGTG GTGTTTTTTG GCTTAAGTTG GGGACCTATT GTTTGGGTTT TATTAGGCGA GATGTTTAAT AATCGTATCC GTGGTGCTGC TTTAGCTATT GCTGCAAGTG CTCAATGGCT AGCAAATTTT GCCATTACCA TGACTTTCCC GATATTGTTG GGCAGCTTTG GTTTGGCTGG CGCCTATGGC TTATACACAG TATCAGCATT ACTAAGTATT TTCTTTGTAA TCAAATATAT AAAAGAAACA CGCGGCATTC GTTTAGAGGA AATGTAA
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Protein sequence | MTSSEPDNSI QKLHDTEEVQ TSFLYVLFIS SVAAIGGFLF GFDSGVINGT VTALGNAFNA SDVASGFNVA SVLLGCAVGA LMAGPISDRF GRKPIMIITA IIFAISAFGS GISSSSAEFI FYRLIGGLGI GAASVLAPAY IAEVAPAALR GRLATLQQLA IVLGLFAAFL SNFLIASVSG GAEAMLMLDI AAWRWMFWVE LLPAVLFLVG VIFIPESPRY LVAQGKIEEA RTIFKRIATG VENEQIEEVK KSLHGDKKPS IRDLFIDGKK KIHPIIWIGI GLSVFQQFVG INVVFYYGAE LWQAAGFDES QSLFINLIAG TTNIISTFIA IALVDKIGRK PLLLVGSVGM FISLGALTFI FGTGGLDEAG KLALSDTTGT VALIMANLFV VFFGLSWGPI VWVLLGEMFN NRIRGAALAI AASAQWLANF AITMTFPILL GSFGLAGAYG LYTVSALLSI FFVIKYIKET RGIRLEEM
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