Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0229 |
Symbol | cyoE |
ID | 3519168 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 231565 |
End bp | 232518 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637282695 |
Product | protoheme IX farnesyltransferase |
Protein accession | YP_266996 |
Protein GI | 71278210 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00331639 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAAG TAATTAATAA AACCATAACA CCTATGCCAT CGGTGATTAA TACCGGCCAC CATCACTTTT CCATTAGTAA CATATTTGCT AATTGGCGTG CTTATTACGA CATTACCAAA CCTAAAGTTG TTGCCTTATT GGTACTAACG GCATTGGTTG GCATGAGTTT ATCTGTTCCT GGGGCCTTAC CGTGGCAACG GCTAATACCT GCGATGCTTG GTATCGGATT ATTATCTTCT GCGGCAGCCG CTATTAACCA TATTGTCGAT GAAAAAATTG ATACTGTTAT GGGTAGAACC CATAACAGAC CTCTGCCTGC AGGTAAAATT AGTGTTACCA ATGCCATTGT ATTTGCCACT AGCATAGCCT TGCTCGGCTT TATTATTCTT TATGCTTTAG TGAATCCACT GACGGCTTTT TTGACCTTAG CTGGCTTAGT CGGCTATAGT TTTGTCTATA CCATGTATTT AAAGCGTGCT ACGCCACAAA ATATTACTAT CGGCGGTTTA GCTGGTGCTA TCCCGCCATT ATTGGGTTGG ACAGCTATGA CCAATGAAGT GGTACCTAAC GCTTTGTTAT TAGTTTTAAT TATTTTTACT TGGACACCGC CACACTTCTG GGCATTAGCT ATTCACCGTA AAAATGATTA TGCCAAAGTA AATATTCCTA TGTTACCGGT AACCCACGGC GTGAGTTTCA CTAAAACACA AATACTGCTC TATACCGTCT TACTCTTTGT AGTTTGTTTA TTACCTTATT TAGTTGGCAT GAGTAATTGG TTGTATTTAA TCGGGGCGTG TAGTTTGAAT TTGATCTTTT TTGGCTATGC TTGGCAGCTC AAGTTTAATG CAAAAGAAGG AACCGCTATG GCAACATTTA AATTTTCCAT CATTCATTTA ATGTTACTTT TCATTATTTT ACTGCTCGAT CATTATTGGC TACCAATGGG CTAG
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Protein sequence | MSKVINKTIT PMPSVINTGH HHFSISNIFA NWRAYYDITK PKVVALLVLT ALVGMSLSVP GALPWQRLIP AMLGIGLLSS AAAAINHIVD EKIDTVMGRT HNRPLPAGKI SVTNAIVFAT SIALLGFIIL YALVNPLTAF LTLAGLVGYS FVYTMYLKRA TPQNITIGGL AGAIPPLLGW TAMTNEVVPN ALLLVLIIFT WTPPHFWALA IHRKNDYAKV NIPMLPVTHG VSFTKTQILL YTVLLFVVCL LPYLVGMSNW LYLIGACSLN LIFFGYAWQL KFNAKEGTAM ATFKFSIIHL MLLFIILLLD HYWLPMG
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