Gene CPS_0002 details

Gene Information

• Locus tag: CPS_0002
• Symbol: dnaN
• ID: 3519276
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 1496
• End bp: 2599
• Gene Length: 1104 bp
• Protein Length: 367 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 637282469
• Product: DNA polymerase III, beta subunit
• Protein accession: YP_266784
• Protein GI: 71279230
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog)
• TIGRFAM ID: [TIGR00663] DNA polymerase III, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGTTTT CACTGAATAG GGAATTATTA CTTAAACCAT TATTATTGGT TTCTGGCGCA 
GTAGAACGTA AAAGTACGTT GCCAATTTTA AGTAATATAC TTTTTGAGGT TAGTGGTCAG 
TCACTTACTT TGACAGCCAC GGATTTAGAA CTCGAAATGG TTGCTTATGC TGAAATTCAG 
AATCAAGGTG ACGATGGTAA GATCACTATT CCGGCTCGTA AATTATTAGA CATATGTAAA 
AGTCTACCAG AGAGTTCTTT AATTTCTTTT GAAGTGATAG ATGAAACTAT TAAGTTATCT 
TCAGGTCGTA GTAAATATTC ACTTTCTACG TTACCTGCTG TCGATTTTCC AAATATTGAA 
GAATGGAAAG GGGATGTTGA GTTTCAACTT TTAAAATCTG AATTTTTACG TTTAATAGAA 
AGCACTCATT TTTCGATGGC CAACCAAGAT GTCCGTTATT ACTTAAACGG CATGTCTATC 
GAAAGTGAAG GAAATGAGAT TCGTTCAGTG GCTACAGATG GTCATCGTCT TGCTATTTGT 
AAAATATCAA ATGAAACTTT AGCATTACCA GCTAGACAAG TTATTGTTCC CCGTAAAGGT 
ATACTTGAAA TAATTCGTCT ACTTGCTCCT GTTGATGAAG CAGTGCAGGT GTTTTTAGGC 
TCTAATCACA TTCGCATTAT TGATAGTGAG TTCTCTTTTA CCAGTAAATT GGTCGATGGT 
CGATTTCCTG ATTACAGAAG AGTATTACCG AGAAACGGCG ATAAAGTTTT TGAAACTAAC 
AAAGATGCAC TTCGTCAGGT TTTATCACGT GCCTCAATTT TATCTAATGA GAAATTTAAA 
GGTGTACGTT TAAATTTCTC AGATACTAAT TTAAAAATTA CGGCCAATAA CCCAGAGCAA 
GAACAAGCTG AGGAAGAAAT TGAAATTAAC TTTCCTTATG GCGAATTAGA AATTGGCTTT 
AACGTTAGCT ATGTTCTCGA TGTGCTAAGT GCTATCAAAG ATGAAAATGT TAAATTTACC 
TTAGCTGATG CAAACAGTAG TGTAGTCATT GAGGGCAGTA GCAATGGCGA AGCGCTTTAT 
GTTGTTATGC CTATGCGTTT ATAG 

 

Protein sequence

MKFSLNRELL LKPLLLVSGA VERKSTLPIL SNILFEVSGQ SLTLTATDLE LEMVAYAEIQ 
NQGDDGKITI PARKLLDICK SLPESSLISF EVIDETIKLS SGRSKYSLST LPAVDFPNIE 
EWKGDVEFQL LKSEFLRLIE STHFSMANQD VRYYLNGMSI ESEGNEIRSV ATDGHRLAIC 
KISNETLALP ARQVIVPRKG ILEIIRLLAP VDEAVQVFLG SNHIRIIDSE FSFTSKLVDG 
RFPDYRRVLP RNGDKVFETN KDALRQVLSR ASILSNEKFK GVRLNFSDTN LKITANNPEQ 
EQAEEEIEIN FPYGELEIGF NVSYVLDVLS AIKDENVKFT LADANSSVVI EGSSNGEALY 
VVMPMRL