| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2361 |
|---|
| Symbol | cwlD |
|---|
| ID | 4206146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 2594178 |
|---|
| End bp | 2594849 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 642566911 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_699626 |
|---|
| Protein GI | 110803779 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | [TIGR02883] N-acetylmuramoyl-L-alanine amidase CwlD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.159201 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA CAATAAAAAT AGTGGCAATT ATAATGCTCT CTTTTTTAGT ATTAAATATT
AACTTATTAA AGGTTAATGC GGAGGAAAAT AATAAGGTAA TAGTTATTGA CCCAGGTCAT
GGAGGCATAG ATGGGGGAGC GAAGAGTGAA AGTGGAGTAA TTGAAAAGGA CATTAATTTA
TCAATATCAC TTAAAACAAA AGCTGCTTTA GAGAGTAAAG GATATAAAGT CATAATGACT
AGAAGTGAGG ATGTAGGATT ATATACTGAG GGTAAGAAGG TTAGAGAAAA GAAAATAGAA
GACTTAGGAA ATAGAGTAAA AATTAAAAAA GAAAATAAGT GTGATGCTTT TATAAGCATA
CATCAAAATA TGTTTCCTCA AAAGAATTGT AAAGGTGCTC AAGTGTGGAG TGCTAATAAT
GAACCTAGTC AAAAACTAGG CAAAATAATA CAACAAAAAT TTAAAGAAGA AGTTGATCAA
AATAATAAGA GGGAAGCAAA AGTTGCAAAA AAAGAATATA AGATTTTAAA TGATGGATAT
GAAGGAGCTT CTGTAATAGT TGAATGTGGT TTTTTATCTA ATCCAGAAGA ATGTGAACTA
TTAGGTAAAG AGGATTATCA AAATAAAATT GCAAATACAT TAGTAAATGC TATAGATGAA
TATTTTAAAT AA
|
|---|
| Protein sequence | MKKTIKIVAI IMLSFLVLNI NLLKVNAEEN NKVIVIDPGH GGIDGGAKSE SGVIEKDINL
SISLKTKAAL ESKGYKVIMT RSEDVGLYTE GKKVREKKIE DLGNRVKIKK ENKCDAFISI
HQNMFPQKNC KGAQVWSANN EPSQKLGKII QQKFKEEVDQ NNKREAKVAK KEYKILNDGY
EGASVIVECG FLSNPEECEL LGKEDYQNKI ANTLVNAIDE YFK
|
|---|
| |