| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1955 |
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| Symbol | |
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| ID | 4205295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 2160921 |
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| End bp | 2161856 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 27% |
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| IMG OID | 642566505 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_699265 |
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| Protein GI | 110802108 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0490064 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATAATA ACTATAGAAT TATAGATAAT TATATACGTA GTGGTGATAA AGCTCATGAT
GAAGGGAATT TAATAAAGGC CTTAAATTAT TATTTAAGAG CTGAGGAGCT TTTAGAAGGA
GAAAGAGATA TTGATTTAAT AATAAGTATA GCTTTAATGC TAGATGAGTT AGGAGATACT
GAAAAGGCCA AGGAAAAATA TGAAGAAGCC TTAAGTATAA ATAGTTTTGA GGTTAGAGCT
TATTATGGAT TAGCAGTGAT TTATGATGAA AAAGAGGATT ATGTAAAGGC TATAGAATTA
TATAAAAAGG CTATAGATAT AAACCCAGTT TATGATAGAG CTATATTTTT CTTAGCAAAT
GCATTAGATA ATGTGGGAGA TAAAGAAGGT GCAATAGAGT ATTACAAAAA GACAATAGAG
GTTTGTAAAG AAGATTTTTG GGCTCATATA AATTTAGGAT CTATATATGA AGAAAGGGAT
ATGCTTCAAG AGGCTTATAG AATGTTTTCT AAAGCTCTTC AAATAGATGG AGAGCACTAT
TTAGCACTTT TTAATATGGG AGTAATATAT AAGAGATTAA ATGTATATGA TAAGGCTAAG
AAATTTTATG AAAAAGCCAT TAAAAAGAAT TTTGGGTATG CTTTTTCATT CTTAAATTTG
GCAGTTATAT ATAAGGAAGA AAATAATATA GAAAAGGGAA TAGAGATTTT ATCTCTGGGT
TTAAGATTTA ATCCAGAAAA TCATTTTTTA TATTATAATA GAAGTTGCTT TAAGGCTATT
TTAGGAAAAG ATTTAGAGGA TGCTACAGAT GATTTAATTA AGGCTGTTGA ATTTTATCCA
GAATTTATAA AATATATAAA TAAAGATAAT GATTTAATTG AGGTAAGAAA TAGTAATAAG
TTTAAAGATT TTTTAGAGGC CATAAATATT GGTTAA
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| Protein sequence | MDNNYRIIDN YIRSGDKAHD EGNLIKALNY YLRAEELLEG ERDIDLIISI ALMLDELGDT
EKAKEKYEEA LSINSFEVRA YYGLAVIYDE KEDYVKAIEL YKKAIDINPV YDRAIFFLAN
ALDNVGDKEG AIEYYKKTIE VCKEDFWAHI NLGSIYEERD MLQEAYRMFS KALQIDGEHY
LALFNMGVIY KRLNVYDKAK KFYEKAIKKN FGYAFSFLNL AVIYKEENNI EKGIEILSLG
LRFNPENHFL YYNRSCFKAI LGKDLEDATD DLIKAVEFYP EFIKYINKDN DLIEVRNSNK
FKDFLEAINI G
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