| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1937 |
|---|
| Symbol | |
|---|
| ID | 4206044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 2142178 |
|---|
| End bp | 2142978 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 642566487 |
|---|
| Product | spermidine/putrescine ABC transporter, permease protein (potC)-like protein |
|---|
| Protein accession | YP_699247 |
|---|
| Protein GI | 110803872 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAAA AGTTAGGTGA TTTTATTTCT AAATTTTATT TAATATTAGT ATTTATATTT
TTATATGCAC CAATAGTAAC ACTTATGATA TTTTCATTTA ACAAAACAAA ATCTATGGCT
GTTTGGGGTG GCTTTACTTT TGATTGGTAC AGCTCCCTAC TTGAAAATGA TAGAATAATA
TCAGCTCTTT ATTATACAAT TTTAATAGCA GTAATAGCCT CTGTTATTGC TACAGTTATA
GGTACTATAA GTGCTATAGG AATTAATAAT ATGAAAAAAG GTCCTAGAAC CTTATTATTA
AACGTAAACT ATTTACCTGT GTTAAATCCT GATATAGTTA CAGGTATTTC ATTAATGACT
TTATTTGCTA TTGGTGGAGT TTTATTTAAT TTAAAACCTG GTTTTTGGAC TATGCTTTTA
GCTCACATAA CATTTGATAT TCCTTATGTT ATATTATCTG TTTTACCTAA GCTAAGACAA
TTGCCTCCAA ATCTAACTGA TGCAGCTTTG GATTTAGGAG CAAAACCATC TTACGCTTTA
AGAAAGGTAG TAATTCCTCA AATAATGCCT GGTATAGCAG CAGGATTCTT AATAGCATTT
ACAATGTCAA TAGATGACTT TGTTATAAGT TTCTTTACTA CAGGTCCTGG TGTTTCTAAC
CTTTCTATAG AAATTTATTC TATGGCTAGA AGAGGTATTT CTCCAGAAAT AAATGCTCTT
TCAACATTAA TGTTTATAGT TGTCTTAGCA TTACTTCTTA TTGCTAATAG AAAACAATCT
TTAGTAAAGG AGGAACGTTA A
|
|---|
| Protein sequence | MVKKLGDFIS KFYLILVFIF LYAPIVTLMI FSFNKTKSMA VWGGFTFDWY SSLLENDRII
SALYYTILIA VIASVIATVI GTISAIGINN MKKGPRTLLL NVNYLPVLNP DIVTGISLMT
LFAIGGVLFN LKPGFWTMLL AHITFDIPYV ILSVLPKLRQ LPPNLTDAAL DLGAKPSYAL
RKVVIPQIMP GIAAGFLIAF TMSIDDFVIS FFTTGPGVSN LSIEIYSMAR RGISPEINAL
STLMFIVVLA LLLIANRKQS LVKEER
|
|---|
| |