| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1836 |
|---|
| Symbol | |
|---|
| ID | 4205277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 2026955 |
|---|
| End bp | 2027752 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 642566386 |
|---|
| Product | polysaccharide deacetylase (nodulation protein NodB) |
|---|
| Protein accession | YP_699150 |
|---|
| Protein GI | 110802090 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | [TIGR02884] delta-lactam-biosynthetic de-N-acetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0269701 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAGA AAGTTTTTTC ATTATTATTT TCAATAATGA TGATTCTATC TATTACTTTA
AACACAAAAG TAAGTGCAAA AGAATTTAAT AGTCCTTGTA CAAAAGAATT TAACTGGTAT
TATTCTTTTA ATAAAGAGGA AGGTATTCCT CATGGACCAA AAGAAACTCC TTATATAAGT
AATCATAAAG TTGTATATTG TGGAGACACA TCAAAAAAAG AAATTTTTCT TACTTTTGAT
GAAGGATATG AAAATGGTAA TACAGCAAAA ATACTTGATA TATTAAAAGA AAATCAAGTT
CCTGCTGCAT TCTTTGTAAC AAGACCATAT ATAAAAGACT ATCCAGACCT TATAAAAAGA
ATGGATGAAG AGGGCCATCT TGTATGTAAT CACACTTCTC ATCATCCATC TATGGCTAAA
ATACTTGATA AAGAAAAATT TACAAAAGAA TTTACTGAAG TTGAAGAGGA ATACTCTAAA
GTTACTGGAA AAGAAATGCC TAAATTCTTT AGACCTCCAA TGGGTAAATA CAGTGAACAA
TCCTTAGCTT ACACTGAAGA ACTTGGTTAT ACCTCTGTTT TTTGGAGTTT TGCTTATAAA
GATTGGTTAG TTGATGAGCA ACCTTCTAAA GAAGCTGCTA AGAAAAAAAT ATTAGATAAA
GTTCATAATG GTGAAGTAGC TCTTCTTCAT GCAGTATCAG ATACTAATAC TGCCATTTTA
GATGAAATTT TAAAAGAGTT AAAATCTAAT GGTTATGAAT TTAAATCTTT AAATGATTTA
ACTCCTAAAA AAGAATAA
|
|---|
| Protein sequence | MIKKVFSLLF SIMMILSITL NTKVSAKEFN SPCTKEFNWY YSFNKEEGIP HGPKETPYIS
NHKVVYCGDT SKKEIFLTFD EGYENGNTAK ILDILKENQV PAAFFVTRPY IKDYPDLIKR
MDEEGHLVCN HTSHHPSMAK ILDKEKFTKE FTEVEEEYSK VTGKEMPKFF RPPMGKYSEQ
SLAYTEELGY TSVFWSFAYK DWLVDEQPSK EAAKKKILDK VHNGEVALLH AVSDTNTAIL
DEILKELKSN GYEFKSLNDL TPKKE
|
|---|
| |