Gene CPR_1790 details

Gene Information

• Locus tag: CPR_1790
• Symbol: xseA
• ID: 4206415
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 1989041
• End bp: 1990243
• Gene Length: 1203 bp
• Protein Length: 400 aa
• Translation table: 11
• GC content: 27%
• IMG OID: 642566340
• Product: exodeoxyribonuclease VII large subunit
• Protein accession: YP_699105
• Protein GI: 110803541
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1570] Exonuclease VII, large subunit
• TIGRFAM ID: [TIGR00237] exodeoxyribonuclease VII, large subunit

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00554465
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTAA AGACATTATC TGTTGGCGAA GTTAATAACT ACGTTAAAAA GTTAGTTGAA 
AATGACTTTA TATTAAAGAA TCTTAATGTC AAAGGTGAAA TATCTAATTT AAAATTCCAT 
TCAAGTGGTC ATATTTATTT TTCATTGAAA GATGAAAATA GCAAGGTTAA CTGCATTATG 
TTTAAAAATA ATGCAGTTAA TTTAGATTTT AGACTAGAAG AAGGAATGAA GGTAGAAATA 
AAGGCTAGAT TAGGTGTTTA TCATAAAGAA GGAACTTATC AGCTTTACTG CGAAAATATT 
AAAAAAGCAG GAATTGGAGA ACTTTTTGAA GAATTTCATA AGTTAAAAAA AGAACTTAGT 
GAAGAAGGAA TTTTTGATGA AAAATACAAA AGAGCCTTAC CAAAATTCCC TAAGAGAATT 
GGAATAATTA CAGCAAAGAC TGGAGCAGCA GTAAGGGATA TAATAAACGT AATACAAAGA 
AGAAATAAAT CTTTAGATAT TATTTTATAT CCAGCTAAGG TTCAAGGAGA AAATGCAGCA 
GATTCAATAA TCGAGGGTAT TAGATATTTT AATAATGAGA AATCAGTTGA TGTTATCATC 
TTAGGTAGAG GTGGAGGATT TATTGAAGAA CTTTGGGCTT TTAATAATAG AGACTTAGCA 
TATGAGATAT TTAATAGTAG AATACCTACT GTATCAGCTG TTGGTCACGA AGTAGATTTT 
ACTATTAGTG ATTTTGTAAG TGATATGAGA GCACCTACAC CATCAGCAGC AGGAGAGTTA 
GTATCACCAT CATTACAAGA AATGATAAAT GATTTATTAA ATAAAAAAGA GTTCTTACAT 
AGAGCTATTG ACAGAAAATT TTTAAATGCA AAGAGAGATG TAGATTTATT ATACAAAGGA 
TTAAAAGGTA ATAATCCTAA AGATATAATT GAAAAAAGAA TAAAAGAAGT AAATTCCTTA 
GAAGAAAAGT TAAACTTTTT AGGAAAAAGA AAAATTGATA AGGCAAAAGA TGAACTTATT 
GCTTTAAATA GCATATTACA AACCTTAAAT CCATTAAACA CCTTAGGAAG AGGATATTCA 
GTAATAATGG ATAAAGAAGA TAAAGTAATT AACAACGTAA GTGAATTAAA AAAGAACGAT 
ATGGTAAAAG TGATAATGAA GGATGGTTCC GTTAATATAG ATATAAAAAT TATTAATGAA 
TAA 

 

Protein sequence

MKLKTLSVGE VNNYVKKLVE NDFILKNLNV KGEISNLKFH SSGHIYFSLK DENSKVNCIM 
FKNNAVNLDF RLEEGMKVEI KARLGVYHKE GTYQLYCENI KKAGIGELFE EFHKLKKELS 
EEGIFDEKYK RALPKFPKRI GIITAKTGAA VRDIINVIQR RNKSLDIILY PAKVQGENAA 
DSIIEGIRYF NNEKSVDVII LGRGGGFIEE LWAFNNRDLA YEIFNSRIPT VSAVGHEVDF 
TISDFVSDMR APTPSAAGEL VSPSLQEMIN DLLNKKEFLH RAIDRKFLNA KRDVDLLYKG 
LKGNNPKDII EKRIKEVNSL EEKLNFLGKR KIDKAKDELI ALNSILQTLN PLNTLGRGYS 
VIMDKEDKVI NNVSELKKND MVKVIMKDGS VNIDIKIINE