| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1753 |
|---|
| Symbol | mnmA |
|---|
| ID | 4205097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1952023 |
|---|
| End bp | 1953102 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 642566303 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_699068 |
|---|
| Protein GI | 110802009 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0601571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACAAAGA AAAAGGTTGT TATAGGTATG AGTGGCGGAG TTGATAGCTC CGTTGCTGCT
TACCTTTTAA AGGAACAGGG ATATGATGTA ATTGGTGTTA CAATGCAAAT ATGGCAAGAG
GATAAGGAAT ATGAGGAAAG AGAAGGAGGA TGTTGTTCGC TGTCAGCAGT GGATGATGCT
AGAAGAGTTG CTCAAAAACT AGATATTCCT TTTTACGTTT TAAACTTTAG AGATAGTTTT
AAAAGAAACG TAATAGATTA TTTTGTAGAC GAATATATAC AAGGTAGAAC TCCAAATCCA
TGTATTGCAT GTAACAAATA TCTTAAATTT GATGAGCTTT TACAAAAAGC TAAAGGTATA
GGTGCAGACT ATGTTGCAAC AGGTCACTAT GCTAAAATCG AAGAAAGAGA TGGAAGATTC
CAACTTATAA GATCAAAGGA TGATAGAAAA GATCAAACTT ATGCTTTATA CAATCTAACT
CAAGAACAGT TAGAACATAC TTTAATGCCT TGTGGAGAAT TCACTAAGGA TAAGATTAGA
GAAATAGCTA AAGAGATCGG TCTAGATGTA CATAATAAAA AGGACAGTGA AGAAATATGC
TTTATTCCAG ATAATAATCA TGGAAGATAC ATATGTGAAG CTGCTCCAAA CAAAGTTAGA
ACAGGAAACT TTGTCGATAA GTATGGAAAT GTCTTAGGAA AACATAAAGG AATAGTCTAT
TATACAATAG GACAAAGAAA AGGCTTAGGA TTAGCTCTTG GAAGACCAGT ATTTGTTACT
GATATAAACC CTGTAACTAA TACTGTTGTA GTAGGACCAG AAGAGGATAT CTTTAAAACT
GATTTAGTTT GTAAAGATAT AAACTTCATA TCTATAGATA AACTTGAAGA CCCTATGGAA
GTTGAAGCTA AAATTAGATA TTCAGCTAAA CCAGCTAAGG CTACTATAAG TCCTATGGAA
AATGGAAGAG TTAAAGTTTC TTTTGAAGAT AAGCAAAGAG CTATAACTAA AGGTCAATCT
GTTGTTTTCT ATAAAGATGA TTTAGTTGTA GGTGGAGGAA TAATCGAAAG CCTACTTTAA
|
|---|
| Protein sequence | MTKKKVVIGM SGGVDSSVAA YLLKEQGYDV IGVTMQIWQE DKEYEEREGG CCSLSAVDDA
RRVAQKLDIP FYVLNFRDSF KRNVIDYFVD EYIQGRTPNP CIACNKYLKF DELLQKAKGI
GADYVATGHY AKIEERDGRF QLIRSKDDRK DQTYALYNLT QEQLEHTLMP CGEFTKDKIR
EIAKEIGLDV HNKKDSEEIC FIPDNNHGRY ICEAAPNKVR TGNFVDKYGN VLGKHKGIVY
YTIGQRKGLG LALGRPVFVT DINPVTNTVV VGPEEDIFKT DLVCKDINFI SIDKLEDPME
VEAKIRYSAK PAKATISPME NGRVKVSFED KQRAITKGQS VVFYKDDLVV GGGIIESLL
|
|---|
| |