| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1663 |
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| Symbol | polC |
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| ID | 4204887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 1855760 |
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| End bp | 1860109 |
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| Gene Length | 4350 bp |
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| Protein Length | 1449 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 642566213 |
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| Product | DNA polymerase III PolC |
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| Protein accession | YP_698978 |
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| Protein GI | 110801936 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01405] DNA polymerase III, alpha chain, Gram-positive type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.351996 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTAACG AATTTGTTAA ACAGATTAAC AGATCCATAA AATCAGATGA TAATCTTAAT
GATTTAGAGT TTGAAATAAC TAAGTTTCAA TTATTGAAGA AAAGCAATAC TTTAAGAACC
ATAATAAAAA GTAAAGATCA ATTATCAGAA GAACAAAAGA AAATAATTAA GCAATATATA
AAAAAAGCTA TAGGTTTTGA AATAAATATA GAGATTATGT ATTACATAGA TATTTCTGAT
ATAACTTTAA AACAGGTAGT AGATCAGCAT TGGAGTCATG TTTGTGAAAA AATTATAGAG
AAACATCCTG TTTTAAAAGA AGTTTTACTT AATTCTCCTA TAGTAATTGA AGGAGAAAAA
ATAATTATAA AAAATGGTTC TGAGTTTTTA TGTACTTTTG TTAATAAGAA ACATATAGAT
AGAGAGATTA AGGGATATAT AAAATCATTC TTTGGAATAA ATTCTTTAGT AGAAGTTAAA
TATGATGAAA GTTTAGCTAA TAAGAATTAC AATGATGAAA AGTTAAATGA AAACAAAGAA
ATAGCTAAAA AAGTTATAGA AACTATGAAA GCCCAAGCTG CTCAAGAAAA GCCTGTTAAG
AAGGAAAGTA GCGATAATAA ACATAAATCT AATGGTGGCA ATAAAGGCGG TTATGAGAAA
AAATCTTATA AAGATGAGCC TAAGAATGAA AATACTATAC TTGGAAGAAA TATTCAAGGA
GATACTATAG ATATAAGCAG TATAGATATG GGCTCTGGAA TTGTTACTAT TTCAGGGGAT
GTATTTAAAA CTGATATTTT TGAAACTAAG ACAGGTAGGA TAATACTTAC ATTCTTTATA
ACAGACTATA CAAGTTCCAT AGCCGTTAAA TGCTTCTTAA GAGATAAGGA TAAAGAACAT
GTTTTAGAAA ATGTTAAAAA AGGTCTTTAT TGTAAAGTAA GAGGAGAAGC TACTATGGAT
CCTTATGCTA AGGAAGTTGT AATAATGGCT AGGGATATAA ATAAGCTTAC AAAAATAGAG
CGTATGGATA CAGCAGAGGA AAAAAGAGTA GAACTTCATA TGCATACAAC TATGAGCTCA
ATGGATGCCG TAACTGCTGC AAGTAAAATT GTTGAGAGAG CAGCAAAGTT TGGACATAAG
GCTGTAGCCA TAACAGACCA TGGAGTTGTT CAGGCCTTTC CAGATGCTCA AATAGCTGCT
AAAAAGAATA ACATAAAAGT TATTTATGGG GTAGAGGGAT ATTTAGCGGA TAATGGAACA
CCTATAGTTA TTAATGGGCA TGAGGAATCC TTTGATGATG AGTATGTGGT TTTTGATATA
GAAACCACAG GGTTTTCAAG TAAAAATGAT AAGATTATAG AAATTGGTGC TGTTAAGTTA
AAGGATGGAG AAATAGTAGA TTCATTTAGT ACTTTTGTTG ATCCAAAGGT AAATATTCCA
TATAAGATTA CAGAGCTTAC AAGTATAACT CAAAATATGG TTAATGGACA GCCTACTATA
GATGAAGTGC TTCCTAAATT TATGGAGTTT GTAGGAAATT CTGTATTAGT AGCCCATAAT
GCTGCCTTTG ACGTTGGTTT TATAAAAAAG AACTTAATGG ATATGGGAAA AACTTTAAAG
AATCCTGTAA TGGATACTGT TCCTTTAGCT AGATATCTTT ATCCAGATTT AAAAAAGGTT
AAGTTAAATC TAGTTGCTAA ACATTTAGGA ATTAGCCTTG AAAATCACCA TAGAGCCGTT
GATGATGCAA AGGCTACTGC GGAGATATTA AAGTTTTCTT TCAAAAAGAT GAAAGAAGAA
ATGGATATTC ATGATGTTAA AACTCTAAAT GAAAAGTATT TATCAAATAT AGATGTAAAG
AAACTTCCTC TACATCACAT AATAATATTA GCTAAAAATC AAACTGGAAT TAAGAATTTA
TATAAATTAG TTTCTATGGC TCACTTAGAT TACTTTGCTA GAAGGCCAAG ACTTCCTAAA
AGTATAATAA CTGAGTATAG AGAAGGATTA ATAATTGGTT CAGCTTGTGA AGCAGGGCAA
TTATATAAGG CGGTTTTAGA AGGCAAGACA GATGGGGAAT TAAAAGAAAT AGCATCTTTT
TATGACTACC TAGAAATTCA GCCAATACAA AATAATGAAT TCCTTATAAG AAAAGGAAAT
GTAAAGGATG AAGAAGAGCT TAGAGAGTTA AATAGAAAAA TATATGATTT AGGAAAAGAA
ATGGATAAAC CAGTAGTTGC TACATGTGAT TGTCATTTCT TAGATCCTAA TGATGAAGTA
TTTAGAAGAA TAATAATGGC TGGTCAAGGA TATGGAGATG CAGATAATCA ACCACCTTTA
TATTTTAGAA CTACTAATGA AATGATGAAA GAGTTTGAAT ATTTAGGAGA AGAAGCTTGC
AGGGAAGTTG TAATAGAAAA TACTCAGAAG ATAGCTGATA TGGTTGAAGC TGTAAAACCT
ATACCAGATG AAACATTCCC TCCTAAAATA GAGGGGGCTG AGGAGGAAAT AAGAAACATG
ACTATGAATA AGGTTCATAG TATATATGGA GAAAATCTTC CTGAAGTTGT TCAAAAGAGA
TTAGATAAAG AACTTAATTC TATAATAAAT AATGGATATG CGGTGCTTTA TCTTATAGCT
CAAAAATTAG TTGCTAAATC CTTAGAAGAT GGATACCTAG TTGGTTCAAG AGGATCTGTT
GGTTCATCTT TCGTAGCAAC AATGTCAGAT ATAACAGAGG TTAATGGATT ACCACCTCAT
TATGTTTGTC CAAATTGTAA GAAATCAGAA TTTTTCTTAG ATGGTTCTAT AAGTTCAGGA
GCAGATTTAC CAGATAAAAA TTGTCCTGAT TGTGGCACTA AGTATATTAA GGATGGTCAT
GATATTCCTT TCGAAACATT CTTAGGCTTT GAAGGAGATA AAGAACCAGA TATAGACCTT
AACTTCTCTG GAGAATACCA AGCTGTTGTA CATAAATACA CAGAGGTTCT TTTCGGAAAA
GGATATGTAT TTAAAGCGGG AACCATAGGT ACAGTAGCTG AAAAAACAGC TTATGGTTTT
GTAAAAAAAT ATCTTCAAGA AAGAGGATTA GTTGTATCTC AAGCTGAAAT AGAAAGGCTT
ACTATTGGAT GTACTGGAAT AAAAAGAACT AGTGGACAGC ATCCAGGAGG AATCATGGTT
GTTCCAAATG ACAATGAAAT ATATAATTTT TGTCCAATAC AACATCCAGC TGATGATGTT
AACACAGATA TTATAACCAC TCACTTTGAT TACCATTCAA TAAGTGGTAG ACTTCTTAAG
CTTGATATAC TTGGACACGA CGACCCGACC GTTCTTAGAA TGCTTCAAGA CTTAACTGGC
TTAGATCCTA AGACAATACC TTTAAATGAT CCTAAGGTTA TAAGTTTATT CACATCACCA
GATGCCTTAG GGGTAACTAA AGAAGAATTA GGATGTGAAG TTGGTAGTTA TGGACTTCCT
GAGTTCGGTA CTAAATTCGT TAGACAGATG CTAGTGGATA CTCAACCTAA GAGTTTTGCA
GACCTTGTGA GAATATCTGG ACTTTCACAT GGTACTGATG TTTGGCTTAA TAATGCTCAG
TACTTTATTA AAGAAGGATA TACTACACTA AAAGACTGCA TAGCAACAAG AGACGATATT
ATGGTTTATC TTATGTATAA AGATCTTCCT CCTAAGACAG CCTTTACTAT AATGGAAAAG
GTAAGAAAAG GAAAAGGACT TAGTGAAGAG GATGAAGCTT TAATGAGAGA GAAAAATGTA
CCAGATTGGT ATATTGAATC TTGTAAAAGA ATAAAATACA TGTTCCCTAA AGGCCATGCT
GTTGCATATG TTATGATGGC AGTTAGAATA GCATATTATA AAGTTTATTA TCCAGAAGCA
TATTACACAA CATATTTTAC AGTAAGAGCT GATGATTTCG ATGCAGACTT AATTTGTAAG
GGTGAAGAAG CAATAAAGGC AAAGATGGAA GAATTAAATT CTTTAGGAAA TAACATATCA
GTAAAAGAAA AAGGGCTTTT AACTATTTTA GAAATTTCTT ATGAAATGTA TAAAAGAGGA
TTGAATTTCT TAAAGGTTGA TTTATATAAA TCAGAAGCAA CTAAGTTTAA GATAGAAGAA
GATGGTATAA GACCTCCATT AAATGCGCTT CAAGGAGTTG GAGATAATGC TGCAAAAAGT
ATAGTTGAAT GTAGAGTTAA TGGAGAATTT ATTTCAAAGG AAGATTTAAG AATTAGATCT
AAGGTTTCAA AGACTGTAAT AGAAACTTTA GATAATCATG GATGCCTAGA AGGAATGCAA
GAAAGTAACC AACTTAGTTT ATTTGGCTAA
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| Protein sequence | MSNEFVKQIN RSIKSDDNLN DLEFEITKFQ LLKKSNTLRT IIKSKDQLSE EQKKIIKQYI
KKAIGFEINI EIMYYIDISD ITLKQVVDQH WSHVCEKIIE KHPVLKEVLL NSPIVIEGEK
IIIKNGSEFL CTFVNKKHID REIKGYIKSF FGINSLVEVK YDESLANKNY NDEKLNENKE
IAKKVIETMK AQAAQEKPVK KESSDNKHKS NGGNKGGYEK KSYKDEPKNE NTILGRNIQG
DTIDISSIDM GSGIVTISGD VFKTDIFETK TGRIILTFFI TDYTSSIAVK CFLRDKDKEH
VLENVKKGLY CKVRGEATMD PYAKEVVIMA RDINKLTKIE RMDTAEEKRV ELHMHTTMSS
MDAVTAASKI VERAAKFGHK AVAITDHGVV QAFPDAQIAA KKNNIKVIYG VEGYLADNGT
PIVINGHEES FDDEYVVFDI ETTGFSSKND KIIEIGAVKL KDGEIVDSFS TFVDPKVNIP
YKITELTSIT QNMVNGQPTI DEVLPKFMEF VGNSVLVAHN AAFDVGFIKK NLMDMGKTLK
NPVMDTVPLA RYLYPDLKKV KLNLVAKHLG ISLENHHRAV DDAKATAEIL KFSFKKMKEE
MDIHDVKTLN EKYLSNIDVK KLPLHHIIIL AKNQTGIKNL YKLVSMAHLD YFARRPRLPK
SIITEYREGL IIGSACEAGQ LYKAVLEGKT DGELKEIASF YDYLEIQPIQ NNEFLIRKGN
VKDEEELREL NRKIYDLGKE MDKPVVATCD CHFLDPNDEV FRRIIMAGQG YGDADNQPPL
YFRTTNEMMK EFEYLGEEAC REVVIENTQK IADMVEAVKP IPDETFPPKI EGAEEEIRNM
TMNKVHSIYG ENLPEVVQKR LDKELNSIIN NGYAVLYLIA QKLVAKSLED GYLVGSRGSV
GSSFVATMSD ITEVNGLPPH YVCPNCKKSE FFLDGSISSG ADLPDKNCPD CGTKYIKDGH
DIPFETFLGF EGDKEPDIDL NFSGEYQAVV HKYTEVLFGK GYVFKAGTIG TVAEKTAYGF
VKKYLQERGL VVSQAEIERL TIGCTGIKRT SGQHPGGIMV VPNDNEIYNF CPIQHPADDV
NTDIITTHFD YHSISGRLLK LDILGHDDPT VLRMLQDLTG LDPKTIPLND PKVISLFTSP
DALGVTKEEL GCEVGSYGLP EFGTKFVRQM LVDTQPKSFA DLVRISGLSH GTDVWLNNAQ
YFIKEGYTTL KDCIATRDDI MVYLMYKDLP PKTAFTIMEK VRKGKGLSEE DEALMREKNV
PDWYIESCKR IKYMFPKGHA VAYVMMAVRI AYYKVYYPEA YYTTYFTVRA DDFDADLICK
GEEAIKAKME ELNSLGNNIS VKEKGLLTIL EISYEMYKRG LNFLKVDLYK SEATKFKIEE
DGIRPPLNAL QGVGDNAAKS IVECRVNGEF ISKEDLRIRS KVSKTVIETL DNHGCLEGMQ
ESNQLSLFG
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