| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1555 |
|---|
| Symbol | |
|---|
| ID | 4206009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1743967 |
|---|
| End bp | 1745673 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 642566106 |
|---|
| Product | ABC transporter |
|---|
| Protein accession | YP_698871 |
|---|
| Protein GI | 110803914 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.100882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGAA AAGCAATAAT AGAGTTTAAA GATTTTACTG CTCATTATAC AGTTCAATCA
AAGCCAACTT TAAATAATAT AAATTTAACT ATATATGAAG GAGAAAAAGT TCTTATAGCT
GGGCCTTCAG GGTCAGGAAA AAGTACATTA GCTAACTGTA TAAATGGATT AATACCATTT
TCAACTGATA TTGAAATTTC AGGGAGTCTT AAAATAAAGG GAAAAGAGAC AAAGGATTTA
AGTGTTTTTG AAATATCTAA AATAGTAGGA ACTGTACTTC AAGATCCAGA TAGCCAATTT
GTAGGATTAA CAGTAGCTGA GGATATAGCT TTTAAACTAG AAAATAACTG TGTATCTCAA
GAAGAGATGA AGAAAAAAGT TAATTATGTA TCAAAAATAG TTGATATAGA AAATAGATTA
GACTTAGCTC CATATAGTCT TTCTGGTGGA CAAAAACAGA GGGTAACCTT AGCTGGAACT
ATTATTGATG ATGTTGATAT ACTTCTTTTT GATGAACCTT TAGCAAGCTT AGATCCAGCG
GCGGGGAAAG CTTCTATAGA ACTTATAGAT AAAATACAAA AGGAAGAAAA AAAGACAGTA
ATAATAATAG AACATAGATT AGAAGAAGTT TTAAATTGTG ATGTAGACAG AATAATACTT
ATGAATGAAG GAGAAATTAT TGCCGATACA ACTCCAAATG AAATATTAGC TTCTAATAAA
TTAAAAGAGT GTGGAATAAG AGAACCTTTA TACATAACAG CTCTTAAATA TAGTGGATAT
GAATTAAATA AGGAAATGAA CCTTGAGAAT ATAGACAAGT TAAAGCTTAG TGATGATGGC
GAGAAATTAA GAACTTGGTA TAAGAGTTTA AATTTTAATA AGAAAGAAAG AGAAGAAGAC
ACACTATTAG AATTTAAAAA TGTATCTTTT TCTTACGATA AGAAAAAAGA TATATTAAAT
GATATTAATT TTAAAATTAA TAGAGGAGAT ATGGTAAGTG TAGTTGGAAA AAATGGCGCT
GGTAAATCAA CTATATCTAA GCTCATATGT GGTTTTTTCA AAGAATCAAA GGGAGATATA
ATATTTGAAG GGAAAAGTTT AGATGGAAAG ACTATTAAGG AAAGAGGAGA AGAAATAGGA
GTTGTTCTTC AAAATCCAAA TCAAATGATA TCTAAAACAA TGATCTTTGA TGAGGTTGCA
TTAGGATTAA GAGTTAGAGG AATTGATGAA AAAGAAGTTA AGGAAAGAGT AATTGAAACT
TTAAAGACCT GTGGTTTATA TCCATATAGA AATTGGCCAG TTTCTGCACT TAGTTTTGGA
CAGAAAAAGA GGGTTACTAT AGCTTCAATA CTAGTTTTAA ATCCTAAGGT TATAATACTT
GATGAACCAA CAGCAGGACA AGACTATAAA CATTATAATG AAATAATGGA GTTTCTTCTA
AAACTTAATA AAAAGGGAGT TACAATAATT TTAATAACTC ACGATATGCA TTTAATGCTT
GAATACACAG ACAAGGCTAT TGTAATTTCA AATGGACGTA AAATAGCTGA TAAAACATCA
GCAGAAATAC TTACAGATAA AGAAGTTATA GAAAAGGCAA ATTTAAAAGA AACATCATTA
TATGATTTAG CCTTGAAATT TAAGGTAGAA AACCCTAAGG ATTTTGTTTG TAAATTTATT
GATTTTGACA GGGGGGTAAG AAATTAG
|
|---|
| Protein sequence | MERKAIIEFK DFTAHYTVQS KPTLNNINLT IYEGEKVLIA GPSGSGKSTL ANCINGLIPF
STDIEISGSL KIKGKETKDL SVFEISKIVG TVLQDPDSQF VGLTVAEDIA FKLENNCVSQ
EEMKKKVNYV SKIVDIENRL DLAPYSLSGG QKQRVTLAGT IIDDVDILLF DEPLASLDPA
AGKASIELID KIQKEEKKTV IIIEHRLEEV LNCDVDRIIL MNEGEIIADT TPNEILASNK
LKECGIREPL YITALKYSGY ELNKEMNLEN IDKLKLSDDG EKLRTWYKSL NFNKKEREED
TLLEFKNVSF SYDKKKDILN DINFKINRGD MVSVVGKNGA GKSTISKLIC GFFKESKGDI
IFEGKSLDGK TIKERGEEIG VVLQNPNQMI SKTMIFDEVA LGLRVRGIDE KEVKERVIET
LKTCGLYPYR NWPVSALSFG QKKRVTIASI LVLNPKVIIL DEPTAGQDYK HYNEIMEFLL
KLNKKGVTII LITHDMHLML EYTDKAIVIS NGRKIADKTS AEILTDKEVI EKANLKETSL
YDLALKFKVE NPKDFVCKFI DFDRGVRN
|
|---|
| |