Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1340 |
Symbol | |
ID | 4204686 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1511217 |
End bp | 1512230 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 642565894 |
Product | LacI family transcription regulator |
Protein accession | YP_698660 |
Protein GI | 110802299 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000460933 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCTACTA TTAAAGATAT TGCAAAGGGT GCTGGAGTTT CAATAGCTAC TGTATCTAGA GTTTTAAATT TAGATGAAAC GCTTAATGTA TCTGAAGAAA CAAGAAAAAA AGTAATGGAA ATAGCTGAAG AATTAAATTA TGTACCAGTA AAAGAAAGAA AAAATAAAAT AAAAAATTAC ACCATAGGAA TAGTTTATTG GTACACAGAA CTACAAGAAT TAAATGATCC ATATTTTCTT TCAATAAGAA TGGCTGTTGA GAAAAAGTGT AATGAAGAAA AGATTAAATT CAAACCGATA GATTTTCAAA AGATAATTAA TGAAGGAACA AGAGAATATA GGGATTTAGA TGGAATATTG GCTATTGGAA TATTTGAAGA AGAAGAGATA AGCTTAATGG AAAAACTATC TAAGAACATA ATTTTTGTAG ATTCTTCTCC AGAAGAGTGG AAATACGATT CAGTGGTAGT AGATTTTAAG TATGGAGTAA ATCTTTGTTT AGATTATTTA ACATCATTAG GCCATAAAGA TATTGGATAT TTAGGGGGAG AATCAATTCC CCATAATGGT AATGAATCCA TAAGAAAGGT AAATTACAGA GAGAAAACCT TTAAAGAATA TATGGAAAAA ATAGATAACT ATAAAGAAAA ATGGGTTCTA AAGGGAAGAT TTTTACCAGA GCATGGTTAT GAACTTATGA AGAAGGTATT AAAAGAGAAG GATCTTCCTA CAGCATTTTT TATAGCTAGT GATCCTATGG CCATAGGAGC CTACAAAGCA ATATTTGAAG AAGGATTAAG AATACCAGAG GATATAAGTA TATTAGGTTT TGATGATATA TGTACTGCTA AATTTTTAAC ACCTTCCTTG ACAACAATAA AAGTTTTTAC AGATCATATG GGAAGTATTG CCGTTGAGAC ACTTTTAGAG AGAATGAGAA CAGGAAGAGA AATAGCTAAG AAAATAGTTT TACCTGTAAA ACTAATAGAA AGAGAAAGTT GTAAAAGACT TTAA
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Protein sequence | MATIKDIAKG AGVSIATVSR VLNLDETLNV SEETRKKVME IAEELNYVPV KERKNKIKNY TIGIVYWYTE LQELNDPYFL SIRMAVEKKC NEEKIKFKPI DFQKIINEGT REYRDLDGIL AIGIFEEEEI SLMEKLSKNI IFVDSSPEEW KYDSVVVDFK YGVNLCLDYL TSLGHKDIGY LGGESIPHNG NESIRKVNYR EKTFKEYMEK IDNYKEKWVL KGRFLPEHGY ELMKKVLKEK DLPTAFFIAS DPMAIGAYKA IFEEGLRIPE DISILGFDDI CTAKFLTPSL TTIKVFTDHM GSIAVETLLE RMRTGREIAK KIVLPVKLIE RESCKRL
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