Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1280 |
Symbol | |
ID | 4205197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 1447234 |
End bp | 1447983 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 27% |
IMG OID | 642565836 |
Product | transcriptional regulator |
Protein accession | YP_698602 |
Protein GI | 110803289 |
COG category | [K] Transcription |
COG ID | [COG2188] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000081725 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACTCA CTACAAAAAA TACTAAAAAC CCCAAAAAAT TGCTTTATAA ATCTGTATAT GATAAGTTAT ATAAAATGAT TATTGATGGT GAATACCCTT TAAATACAAA ATTGCCATCT GAGCCTGAGC TTGCAAAAAG TTTTGGGGTT AGCCGAATGA CTTTGCGTCA AGCACTTGCT TTACTACAAG ATGACGGTTT AGTAAAAAAT ATAAGAGGTA AAGGAAATTT TATAATATCT CCAGAAAAAC ATACTAAAAT AGATTTTTTA GAGTTAATAG GAAATCCTAT ATACAAGTGT CATACTGAAA AAATTAAAGA TATTGAATTT GTATTCCGCT TAGAACTTGA TAGTGATTAT ACTAAACAGG TTTTAGAAAA GGATTCCACA GCAGTGGTTG CTTGTGAACG TTATTATAAA AGTAAAAATA AAGTTTTAGC CTACGCTTTT ACCTTTATAT CTGTTGAAAC TATAAAAGAA TTTAAAATAG ATTTAAATAA TGAAAGTGAG CTACTAGACT TTCTTGAACA TAACTCCTAT GAAATATCAA AAAGTTCTGT ATTAGAAATA AAACATTCCT CTGCTGGTAA CTCCTTAAAT CCAAAATATA AGCTTGTTGG AGGAAATCAA TGCGATTTAA TTTTAGAAAC ATTATATGAT AATGATTATT CCCCTCCTAT ATTATTTAAC AAATACTATA TTCCATCTCA ATATAGTACT TTTAAAATTA AAGCAAGAAA AAAAGAATAA
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Protein sequence | MKLTTKNTKN PKKLLYKSVY DKLYKMIIDG EYPLNTKLPS EPELAKSFGV SRMTLRQALA LLQDDGLVKN IRGKGNFIIS PEKHTKIDFL ELIGNPIYKC HTEKIKDIEF VFRLELDSDY TKQVLEKDST AVVACERYYK SKNKVLAYAF TFISVETIKE FKIDLNNESE LLDFLEHNSY EISKSSVLEI KHSSAGNSLN PKYKLVGGNQ CDLILETLYD NDYSPPILFN KYYIPSQYST FKIKARKKE
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