| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1263 |
|---|
| Symbol | gltA |
|---|
| ID | 4204189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 1419993 |
|---|
| End bp | 1421399 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 642565819 |
|---|
| Product | putative oxidoreductase |
|---|
| Protein accession | YP_698585 |
|---|
| Protein GI | 110802445 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01316] glutamate synthase (NADPH), homotetrameric |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00449905 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATT TAAAAAAGAA AAGAGTTAAA TCTAGGGAGC AAGATCCAAT AGAAAGAGGT
AAAAACTTTA AGGAGGTTTC CCTAGGATAT AAAGAAGAAG AGGCTATTGA AGAGGCAAAT
AGATGTTTAG GATGTAAAAA TCCTAAGTGT GTAGAAGGCT GTCCTGTTTC TGTAAATATA
CCAAGTTTTA TATCTTTCAT AAAGAAAGGA GATTTTTCTG CTTCTTTTGA AGAATTGTCA
AAATATAATG CTTTACCTGC TGTATGTGGG AGAGTTTGTC CACAAGAATC TCAATGTGAA
GGAAAGTGTG TTTTAGGAAT AAAGGGAGAA CCATTAGCTA TTGGACAACT AGAAAGATTC
ATAGCAGACT TTGCAAGAAA TAATAAATTA AGCCCTTTAA AAAAGAGTGA TAAGACTTTA
GAGAAGGTAG CTGTTATTGG AAGTGGCCCT GCTGGTTTAA CCTGTGCAGG AGAACTAGCT
AAACTAGGAT ATAGAGTAAC TATTTTTGAA GCATTACATG AATCTGGAGG GGTTTTAGTT
TATGGAATTC CAGAGTTTAG ATTGCCAAAG AAGGATGTAG TTAAATATGA AATAGAAGAA
ATAAAAAAAC TAGGAGTTAA AATAGAAAAT AATGTTGTTG TAGGAAAAAC TGTGGACATT
GATGAATTAA TAGAAAATGA AGGATTTAAG GCTGTCTTTA TAGGTTCTGG AGCAGGTCTT
CCAAAATTCA TGGGGATTAA AGGGGAAAAT GCTAATGGAG TTTTTTCAGC TAATGAAGTT
TTAACTAGGG TAAATCTTAT GAAGGCTTTT AAAAATGAAA GCCATACTCC TTTAAATTTA
GGAAAAAAGG TTGCTGTAGT TGGTGGAGGA AATGTTGCCA TGGATGCAGC TAGAACCTCC
TTAAGATTAG GAGCAGAAAC TCACATAATT TATAGAAGAA GTGAAAAGGA ATTGCCAGCT
AGATTAGAAG AAATTCATCA TGCTAAGGAA GAAGGAGTTA TTTTAGATGT TTTAACTAAT
CCTACTGAAA TTTTAACTGA TGAAAATGGT TGGGTAAAGG GTATAAAGTG TATAAGGATG
AAACTTGGAG AGGAAGATTC TTCAGGAAGA AGAAGACCAA TTGAAATTGA AAATTCAGAG
TTTATTATGG AAGTAGATAG TGTAATAATG TCCTTAGGAA CTTCTCCTAA TCCTTTAATA
TCTAATGCCA CAAAGGGATT AAAGACTAAT AAGAGAGGAT GTCTTCTTGT AGATGAAGAA
AGCTTAAAAA CCTCCTTAAA GGGAATTTAT GCAGGAGGAG ATGCTGTTAC AGGAGCAGCT
ACAGTTATTC TTGCTATGGG AGCAGGAAAA AAAGCTGCAA AGTCCATTGA TTCTTATTTA
AGAAAAGAAG AGCAAAATAA TATTTAG
|
|---|
| Protein sequence | MSNLKKKRVK SREQDPIERG KNFKEVSLGY KEEEAIEEAN RCLGCKNPKC VEGCPVSVNI
PSFISFIKKG DFSASFEELS KYNALPAVCG RVCPQESQCE GKCVLGIKGE PLAIGQLERF
IADFARNNKL SPLKKSDKTL EKVAVIGSGP AGLTCAGELA KLGYRVTIFE ALHESGGVLV
YGIPEFRLPK KDVVKYEIEE IKKLGVKIEN NVVVGKTVDI DELIENEGFK AVFIGSGAGL
PKFMGIKGEN ANGVFSANEV LTRVNLMKAF KNESHTPLNL GKKVAVVGGG NVAMDAARTS
LRLGAETHII YRRSEKELPA RLEEIHHAKE EGVILDVLTN PTEILTDENG WVKGIKCIRM
KLGEEDSSGR RRPIEIENSE FIMEVDSVIM SLGTSPNPLI SNATKGLKTN KRGCLLVDEE
SLKTSLKGIY AGGDAVTGAA TVILAMGAGK KAAKSIDSYL RKEEQNNI
|
|---|
| |