Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1258 |
Symbol | |
ID | 4204710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1412229 |
End bp | 1414784 |
Gene Length | 2556 bp |
Protein Length | 851 aa |
Translation table | 11 |
GC content | 27% |
IMG OID | 642565814 |
Product | hypothetical protein |
Protein accession | YP_698580 |
Protein GI | 110802924 |
COG category | [S] Function unknown |
COG ID | [COG0392] Predicted integral membrane protein [COG2898] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0075337 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAGTTAA ATATAAAGAT AAGTGATAAA TTAAAATTAT TTTTTAAAAT AGCATTCGTT TCCTTAGTAA TACTGTTTAT AGTTAGGGAA TTTACTTCAG TATTTAAAAA TTTCAATTCA GAATATTTCT TTATGTATAG AAATAAACTA GACTTTTTAA ACCTATTAAT AATTGCAGCA TTAGGTGTAA TTTCTTACAT TCCTTTATCT TTCTACGATT TCATTTTAAA GAGAAAAGTT AGAATAAGAT TAAAAAATAG AAAGTTATAT AAGTATTCTT GGATAGCAAG TTCTATTGCA AGTTTGCTTG GATTTGGAGG AGCTACATCC TTAGCTTTTA AACAGTATTT TTATGGTGAT TATGTAGATG ATAAAAAGAA ACTATTAAAA GAAATTGGTA AAATAGTAGC CTTAAACTTA ACAGGCTTAT CAATAGTTTG TTGTACATAT ATGGGTATTA GAATATCTTC ATGGAATAAT CTAGGTATAA TAAAATATGC CATAGGAATA ATAGCCTTAT ATGCACCAGG ATTTATACTT TACTCAGCTT ATAAATATAG CAAAACAAAG GATAAGTTAG AGTTTTTCAG CACCTTAGGT ATTATATTCA TATCATTTTT AGAGTGGCTT ACAACAATAA TTTTAATTTA TGAAACTTTA AGAATAACAG GAGCATCAAT AAGTGTTTTA AATTTCTTGC CAATATATAT TGAATCAGCA GTTGTTGGAA TGATTAGTAT GATTCCAGGG GGAATTGGTA CCTTTGATTT AACCTTTATG ACTGGATTAG AGGCCTTAGG TATTCCTATA GAACAAACCC TATTAGTTAT AATACTTTAT AGAATAAGTT ATTACATAGT TCCAGCGCTT ATAGGTGTAT TACTTTTTGT ACATGATTTT GGTGGAAAAA TAAATAAAAA GTTTAATGGA TTACCTTATG AAATAGTTTC TAAGGTGGCT TATAAGATAG TGGTTTCTTT AGTATTTATA TCAGGAGCTA TTATAGTTTT ATCAAATATA GCACCTCAAT ATTTATTAAA GATAAAATTA TTAAAAGAAA TTTTAGGTAA ACAAGTATTA GGATTATCAA TTGGAATGAG CGTAGTACTA GGATTTTTAA TAATGCTTGC AGCTCTTATG CTAAAATATA GGGCTAAAAG TATTTACAAA GCAAGTATGG TTTTATTTAT ATTAGGAATA ATATTGTCCT TAACAAAGGG AATTAATCCT TATGAATTAG TATTTTTAAT TATTGTAGCT TACCTTCTAT ATTTAAGTAA GAGAATGTTC TACAGGGATA GCTTTGTTGT AAGTTGTAAA AATACCTTAA TAGATTCAGG GATATTAATT GCATCTTTTT CAATTTATTT CTTTATTTTA ATTACCTTTG GAACACATCT TAAATATGTA GGAATAGTTC GTAAAATGCC TTATAAAATG GCATATAAAT TTGGATTTAT AGCTTTTGCT TTAGTAACTG TAATATATGT AGCTATTTAC TTTTTAAATA TAAGAAGAAA AATTCCTGTT AAGACCTTTG ATCAGTGTAG CGAATATATA GAAAAGATAA TAGAAGAATA CAAGGGTGAT TCCCTAACTC ATTTAGTATT TTTAAAGGAT AAGTATATTT ATTTAAATGA AGATAAGGAT CTTTTCATTC AATATGAAGT CTATGGAGAT AAGCTTTTTG TTTTAGGAAA TCCTGTGGGC AATAATGAAA ATCTATTTAG GGAAATAGAA AAGTTTTGTG AGTATGCTGA TAACTATGGT TACACACCAG TTTTTTATCA GGTTAATGAA GAAATGATAA GTTACCTTCA TTCTAATGGA TATGATTTTA TGAAAATTGG AGAAGAAGCT AAGGTTGATG TAAAAGAATT TAAAGTTGTA GGAAATAAAA TGAAGAGTTT AAAAACTTCA AGAAGTAAGG TGACTAAGGA AGGTTATACT TTCCACATGG TTGAACCACC TTTTTCAAGG GAATTTTTAG ATTACTTAAA AGAAATATCA GATGAATGGT TAGATGGAAG AAAAGAAAAA GGATTTTCAG TGGGATTCTT TGATGAAGAT TATTTAAATA AAGCTCCTAT AGCTATTTTA AGAGATAGAG AGGGAGAAAT AAAAGCCTTT GCTAATATAA TGTATATGTA TGATGATGAA AGCTTCTCAG TGGATTTAAT GAGATTTAGT AAAAATACTC CAAGGGGAGT TATGGATTTT ATGTTCATAA ATTTAATTGA GTATGGAAAA GAAAAGGGAT ATGAAATATT CAACATGGGA ATGGCTCCTT TAGCCAATGT TGGTTTATCT AAGTATGCTT TCTGGAATGA AAAATTAGCC CTTCAATTCT ATGAGAATGG ACAAGCACTT TACTCCTTTA AAGGATTAAG ACGTTTTAAA GAGAAGTTTA GTCATAATTG GGAGTATAAA TATATTGCTT ACAGAAGAAA TACATCCATA CTAATAACAG TAATACAAGC AGCTATAGTT TGCTCAAGAA ATAGAAATGT AGATGAAAGT ATAGTTGTAA GAAACTTAAA AAGTTTAATT AAATAA
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Protein sequence | MKLNIKISDK LKLFFKIAFV SLVILFIVRE FTSVFKNFNS EYFFMYRNKL DFLNLLIIAA LGVISYIPLS FYDFILKRKV RIRLKNRKLY KYSWIASSIA SLLGFGGATS LAFKQYFYGD YVDDKKKLLK EIGKIVALNL TGLSIVCCTY MGIRISSWNN LGIIKYAIGI IALYAPGFIL YSAYKYSKTK DKLEFFSTLG IIFISFLEWL TTIILIYETL RITGASISVL NFLPIYIESA VVGMISMIPG GIGTFDLTFM TGLEALGIPI EQTLLVIILY RISYYIVPAL IGVLLFVHDF GGKINKKFNG LPYEIVSKVA YKIVVSLVFI SGAIIVLSNI APQYLLKIKL LKEILGKQVL GLSIGMSVVL GFLIMLAALM LKYRAKSIYK ASMVLFILGI ILSLTKGINP YELVFLIIVA YLLYLSKRMF YRDSFVVSCK NTLIDSGILI ASFSIYFFIL ITFGTHLKYV GIVRKMPYKM AYKFGFIAFA LVTVIYVAIY FLNIRRKIPV KTFDQCSEYI EKIIEEYKGD SLTHLVFLKD KYIYLNEDKD LFIQYEVYGD KLFVLGNPVG NNENLFREIE KFCEYADNYG YTPVFYQVNE EMISYLHSNG YDFMKIGEEA KVDVKEFKVV GNKMKSLKTS RSKVTKEGYT FHMVEPPFSR EFLDYLKEIS DEWLDGRKEK GFSVGFFDED YLNKAPIAIL RDREGEIKAF ANIMYMYDDE SFSVDLMRFS KNTPRGVMDF MFINLIEYGK EKGYEIFNMG MAPLANVGLS KYAFWNEKLA LQFYENGQAL YSFKGLRRFK EKFSHNWEYK YIAYRRNTSI LITVIQAAIV CSRNRNVDES IVVRNLKSLI K
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