Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1055 |
Symbol | |
ID | 4204502 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 1202750 |
End bp | 1204426 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 22% |
IMG OID | 642565611 |
Product | sensory box histidine kinase/response regulator |
Protein accession | YP_698377 |
Protein GI | 110803182 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.952288 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGATT TTAATTTTGA GGAAATAATA GAGTCATGTC CTATGGATTA TATTTATGGG AAACTAACAG GTGATGATTA TTTTGATTTA TTTGTGCTTA AGTCTAGCAT AAAAGAATTT AATTTAAAAT TGTTAAGCGA AGTACTAGGG TATAATATAG ATTTTAAAAT TATATTTAGC AAAAACTATA ATTTTATAGA AGAATATTGC AAAGGTTTAA ATGAGAGTTT TAGTTTGAAA TTAATTGATA ATGATTATGT GATTATTTGG TTTAATAGAT ACTTATTTAA AAAATATAAT AAATTAAAAC TTGGATTTAA GAAAGAAAAA GAAATATTAG ATTTATTTTT AGATTCTTTA AAAGAATATA TAACTTTTAA TCATATTGAC AGAAAATATG TAATAGAAAA AACTAATAAA GATATATTTT TTGATGATAA AAATAATGAA TTTAAAGATA TAAGTGGAAT AGCAGAGAAT ATATTCTATA AAAGAGCTAT AGAATATGGA GTTAATAAAA ATGATGAGAT GTTTTTTGAA ATTTTCAATT ACTTAGATGA TGTTGTAATT ATAAAAGAAG GAGAAAAAAC TATTTATGTA AATAATGCTT TTGAAAAATT GTATGGTTTA AATTGCAAAG ATTTATATAG AGAAAATAGT ATGATTGTAA AATTAGATAG AATCCATCCT AAGGATAGAT ATAAGTTTAA CAATATAGAC TTTAAAAAAT TTTTTATGGC AGAAGCAAGG ATTATTAGAG CAGACAATGA AGTTAGAAAT GTTTTATTTA GAGCAAATTC AATAAAAAAT GAAAATGGAG AATCTATAAG GAGAATTATA ATAATAAATG ATATTACAAA TAATATAGAA AAAGGAAATG AAATGGAGAA ACTTAGAATG GAGTTTTTTG CTAATATATC TCATGAATTT AAAACACCTG TAAATTTAAT ATACAGTGCA CTTCAACTTT TAGAATTAAA ATTAAAAAAT AATAGAGATG GAGATATTTA TATTAATTAT ATTAAAATGG CTAAGCAGAA TGTTTTTAGA CTATTAAAGC TAATAAATAA TTTAATAGAT AGTACTAAGT TAGAAGCTGG CTTTTTTAAT GTTAATATTA AAAATCATGA TATAGTAAGT TGTGTTGAAG ATATAACAAT GTCTATATGT AATTTTGCTG AAAAAAATAA AATATCTATA ACTTTTGATA CGGAAGAAGA AGAAAAAATA ATTGCTTTTG ATTTCAATCA TTTAGAAAGG ATACTGTTAA ATGTTTTATC TAATGCTATA AAATTTAACA GGGAAAATGG CAATATAGAT GTCTATATTA GTTTTGATGA TAAGTATGCA AATATAAGTA TTAAAGACAC GGGTATAGGA ATACAAAAGG ATAAAATAGA TTTACTTTTT CATAGATTTA AAAAAATAAA TAATAGATTA ACCAAGGTTA ATGAGGGAAG TGGAATAGGG CTTTACATAG CTAAGGAACT TGTAAAAATT AATGGGGGTG ACATGATAGT TAATAGTGAA CTTGGAGAAG GAACTGAATT TATAATAAAA CTTCCAATTA AAAAAAATGA AAGTAAAGTT TTAGATGAGA TAGCCTTAAC ATCCTGTGAA ATAGAAAATA GAGAAGAACT TTACAAAGTG GAGTTATCAG ATATTTATAG CATTTAG
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Protein sequence | MKDFNFEEII ESCPMDYIYG KLTGDDYFDL FVLKSSIKEF NLKLLSEVLG YNIDFKIIFS KNYNFIEEYC KGLNESFSLK LIDNDYVIIW FNRYLFKKYN KLKLGFKKEK EILDLFLDSL KEYITFNHID RKYVIEKTNK DIFFDDKNNE FKDISGIAEN IFYKRAIEYG VNKNDEMFFE IFNYLDDVVI IKEGEKTIYV NNAFEKLYGL NCKDLYRENS MIVKLDRIHP KDRYKFNNID FKKFFMAEAR IIRADNEVRN VLFRANSIKN ENGESIRRII IINDITNNIE KGNEMEKLRM EFFANISHEF KTPVNLIYSA LQLLELKLKN NRDGDIYINY IKMAKQNVFR LLKLINNLID STKLEAGFFN VNIKNHDIVS CVEDITMSIC NFAEKNKISI TFDTEEEEKI IAFDFNHLER ILLNVLSNAI KFNRENGNID VYISFDDKYA NISIKDTGIG IQKDKIDLLF HRFKKINNRL TKVNEGSGIG LYIAKELVKI NGGDMIVNSE LGEGTEFIIK LPIKKNESKV LDEIALTSCE IENREELYKV ELSDIYSI
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