Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_1035 |
Symbol | |
ID | 4204943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | - |
Start bp | 1177773 |
End bp | 1179407 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 21% |
IMG OID | 642565592 |
Product | GGDEF domain-containing protein |
Protein accession | YP_698358 |
Protein GI | 110801973 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00577049 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAATA AAAAAAAGAA ATATTTATTA ATTTTATTAA TTTTTTTAAT AGTTATTAAT TTATTTATAT TTTCTTTTTA TAAATTTAAA TCAAATAAAA AAAATAAAAA ATATATAGAG AAAACTAATT CAATTTTATA TGAATTTAAA TTATATATGA AAAAAAGAGA TTTTAAAAAT TGTGAAAATA AACTTTACTC AATTGTAAAT AATAAAGATA TGTTTTATAG TTTACCTGAT AATTTAAAGT TCGAGATTTA TAATTATTTA GCTATAATAA ATCTTCAACA AGAAAAATTT TTAAATGCTT TATCTTATTA TGAAGAAGCC TTTAAATATG CTGATAAAGA GTCAAAGATA ATTATTAAGC TAAACATGAC ATCTGCTTAT AGATATATGG GGGCCTATGT TACTGCTACT AATATTTTAA ATAAAATGAT AGAGTCATCA TTAACTTTTA AAAATGAAAA TTCTTATCTT AAAGAATATA CTCTATTAAA TTTAGCTGAA ACTTATTTTG CTGTAAATGA TATAACTGAC TTTAATTCTA CAATAGAAAC TATATCGAAA TATTATTGTG GGCCTGAAAA TGAGTTAGCA GATCTAAAAA TACTTTTAGA TTCCTATTTA ATAATAAAAG CAATATCAGA GAATAACCTT GATTTAGTAC CAAAATACAT TTCTGAAATA GATGAATTAG AAAGTAAAAA TAAAGATCTC ATATATTCAG AATTAGAAAT GATTAAACTT CGTTCATATG GTATGTATTA TGAAAGCATA GGAAATTTCA ATTTAGCATT AGATTATTTT TCCAAATTAG AAAAATCAGC TGATAATGAA GGTGCTTCTT ATGTTTCGCT TTTTTCTATA AGCAAAAGAA TTTCTATCTA TAAAAAATTA AATGATACTT ATAAAATAAA TTATTTAATA AATAAATATT ATGAAAAACA AACTTCAATA AATGACATAA ATAATAATGA ATTTAAATAC TATATAGATA ATAAAATTAT AAACAATCAT GAGTTACCAT TTTTAAAAGA AACAATTATT ATTTTAACAA TTCTATTTTT AATCTCTATT TTATTAGTGC TTTTTTACTT AAAGAAAGCT CGGGATTCAA AATTAGATTC TTTAAAAGAT GGACTTTGCA ATATTTACAA TAGGCGTTTT TTAGACTCTT ATATAAATAA TTTAAAAGAA AAGGATCTAC CTATTTCTTT TTTAATGATA GATGTAGATT ATTTTAAACT TTATAATGAT AACTATGGTC ATCAAGCAGG TGATTTTGTG CTAAAAAGCA TATCTTCTGT ATTAAAAAGA AATTCTCGTA AGGAAGATAT AGTTTCACGT TATGGAGGAG AAGAATTTTG TGTTTTACTA AAAGGAGCTT CTAAACATTC TTCTATTAAT TACGCTAAAA GAATCAAAGA AAATTTAGAT AATTTAAATA TAAAGCATAA ATACTCAAAA ATTTCTAACA ATGTAACCTT TAGTATAGGA ATATATACTA CATATACTAA AAACGATCTA AAAAATGCTA TTAAACTTTC TGATAAAGCA CTATATATAT CTAAAACAAG AGGGAGAAAT ACATATACTT ATCTAGAAGA TAACTCTTCT GATTCTTCTA ATTAA
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Protein sequence | MKNKKKKYLL ILLIFLIVIN LFIFSFYKFK SNKKNKKYIE KTNSILYEFK LYMKKRDFKN CENKLYSIVN NKDMFYSLPD NLKFEIYNYL AIINLQQEKF LNALSYYEEA FKYADKESKI IIKLNMTSAY RYMGAYVTAT NILNKMIESS LTFKNENSYL KEYTLLNLAE TYFAVNDITD FNSTIETISK YYCGPENELA DLKILLDSYL IIKAISENNL DLVPKYISEI DELESKNKDL IYSELEMIKL RSYGMYYESI GNFNLALDYF SKLEKSADNE GASYVSLFSI SKRISIYKKL NDTYKINYLI NKYYEKQTSI NDINNNEFKY YIDNKIINNH ELPFLKETII ILTILFLISI LLVLFYLKKA RDSKLDSLKD GLCNIYNRRF LDSYINNLKE KDLPISFLMI DVDYFKLYND NYGHQAGDFV LKSISSVLKR NSRKEDIVSR YGGEEFCVLL KGASKHSSIN YAKRIKENLD NLNIKHKYSK ISNNVTFSIG IYTTYTKNDL KNAIKLSDKA LYISKTRGRN TYTYLEDNSS DSSN
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