Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0810 |
Symbol | |
ID | 4206407 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 935269 |
End bp | 936186 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 30% |
IMG OID | 642565369 |
Product | polysaccharide deacetylase family protein |
Protein accession | YP_698135 |
Protein GI | 110803533 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00210366 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAAA TAATGAAAAT GGGTCTTATT CTTAGTGTGT TAATATGTTT AGGGGCTTTT GTAGGATGTA ATTCACTAAA CAAAAAGCAG GTTGAGGCAA CAGAAAATAA AGAAGCTGTA GAAACTAAAG ATACAACAAA TGAAAAAAAT ACAGAAGGTA AAGATAAGGC AAAGACAAAT GAATTAGAGT ATTTACCTTT TGATAAAGAT CCGAATGCTG AGGATGGGAA AGTTGTATCA GAGTACACTA ATGGTCTTTT AAAGGGAACA TTACAATATC CAGTTAGAAA AGATGGTAAA AAGATAGTGT ATTTAACTTT TGATGATGGT CCATCAACAA CTAATACACC AGAGGTTTTA AAGATTTTAG ATAAATATAA TATAAAAAGA ACTTTCTTTG TAACAGGAAA TTCTATAAGT GCTGGAGATA AATCAAAAGA ATTATTAAAG CAGATTGTTA AAAATGGACA TGCTATAGGA AATCATACAT ATAGTCACGA TTACAAATAT CTTTATCCTA ATAGAAAGAT GAATGTAAAT AACATAATGT CAGATATAAA TAAGAATGAA AACTTAATGA AAGAAGTCTT AGGTGAAGAT TTCTCAACAA AAGTAGTTAG ATTCCCAGGT GGATACTGGT CTTGGCAAGA TAGAACACCT ATGAAGGAAA AAATGATTCA AGAGGGAATA CAAAACATTG ATTGGAATGC CTTAAATGGA GATGCAGAAG GAAAAAAGAA AAATGCAGAT GAATTAGTTG AATTTGCTAA GAAAAGTGTA GAAGACTTAG GCCCTAATGC AGACAATGTA GTAGTTTTAA TGCATGATAC TTATGGAAAA GAAGAAACAG TTAAGGCTTT ACCAAGAATA ATAGAGTACT TACAAAGCAA AGGCTTTGAA TTTAAGAGCA TTAAATAA
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Protein sequence | MKKIMKMGLI LSVLICLGAF VGCNSLNKKQ VEATENKEAV ETKDTTNEKN TEGKDKAKTN ELEYLPFDKD PNAEDGKVVS EYTNGLLKGT LQYPVRKDGK KIVYLTFDDG PSTTNTPEVL KILDKYNIKR TFFVTGNSIS AGDKSKELLK QIVKNGHAIG NHTYSHDYKY LYPNRKMNVN NIMSDINKNE NLMKEVLGED FSTKVVRFPG GYWSWQDRTP MKEKMIQEGI QNIDWNALNG DAEGKKKNAD ELVEFAKKSV EDLGPNADNV VVLMHDTYGK EETVKALPRI IEYLQSKGFE FKSIK
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