| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0609 |
|---|
| Symbol | |
|---|
| ID | 4206609 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 728215 |
|---|
| End bp | 728910 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 642565169 |
|---|
| Product | DNA-binding response regulator |
|---|
| Protein accession | YP_697936 |
|---|
| Protein GI | 110801877 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000282114 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATA AAAAAGTCCT AATAGTAGAT GATGAGGAAC ATATTAGAGA ACTTATAAAA
TTTAACTTAA AAAAAGAGGG ATATGATATA GAGGTTGCTG TTAATGGAAC TGAAGCTCTA
AATATTATAA GAGAAATTAA GTTTGATTTA ATACTTTTAG ATTTAATGCT TCCAGAAATA
GATGGTTTAG AAGTATGCAA AGAAATTAGA AGAAATGAAG AAACTTCAGA TATTCCAGTA
ATGATGATTA CAGCAAAGGG GGAAGAGTTT GATAAAGTAT TAGGCTTAGA ACTTGGAGCA
GATGATTATA TAACAAAGCC ATTTTCAATA AGAGAACTTA TGGCTAGAGT AAAGGCTTTA
CTTAGAAGAA GTAATTTTAA AAAAGAAGAA AATATAATTA AATTTGGTGA TGTAGTAGTT
AATTTTAAAA CAAGAGAAGT AATAAAAGGA ACTCAAAATG TAGAATTAAC ATTAAAGGAG
TTTGAATTAT TAAAGCTTCT TATAAAGAAT AAGGACAATA TATTAACTAG AGAGCTTTTG
CTTGATAAAA TTTGGGGATA TGAATACATA GGGGAAACAA GAACAGTAGA TGTTCATATT
AGACATTTAC GTAAAAAGAT TGAAAGTGAT GATAAAAATC CTCAATATAT TCAAACTATA
AGAGGAGTTG GGTATAAGTT TACAAGCAAT GAATAA
|
|---|
| Protein sequence | MTNKKVLIVD DEEHIRELIK FNLKKEGYDI EVAVNGTEAL NIIREIKFDL ILLDLMLPEI
DGLEVCKEIR RNEETSDIPV MMITAKGEEF DKVLGLELGA DDYITKPFSI RELMARVKAL
LRRSNFKKEE NIIKFGDVVV NFKTREVIKG TQNVELTLKE FELLKLLIKN KDNILTRELL
LDKIWGYEYI GETRTVDVHI RHLRKKIESD DKNPQYIQTI RGVGYKFTSN E
|
|---|
| |