| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0477 |
|---|
| Symbol | |
|---|
| ID | 4205700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | + |
|---|
| Start bp | 567700 |
|---|
| End bp | 568647 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 642565034 |
|---|
| Product | ABC tranporter, permease protein |
|---|
| Protein accession | YP_697805 |
|---|
| Protein GI | 110802955 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATAT CAGTTAAAAG TAAGGAAAAA TTAAAATTGA AACGTATAGA GAAGGAAGAA
TTGAAGTTTA ATAAGAAGAA TATGAAGGAG TGGGGTTGGG GATATGTTAT GATAGCTCCA
ACAATAATTG GACTATTAAT ACTTAATATT TTTCCTGCAA TAAAAACTTT TATTTTGAGT
TTTCAAAAGA CTGGAGACTT TGGAAATAAC GTTTGGACAG GTTTAAGTAA TTATAAAAAA
TTATTAACAG ATGAAGTGGT GATTAGCGCA ATAGGAAATA CCTTTAAATA TGCTATTATA
GTTGTTCCTA TAAGTATTAT CTTATCTTTA ATAGTAGCGG TTTTATTGAA TCAGAATATT
AAAGGGAAAT CACTTTATAG AACAATATAT TTTCTTCCAA TGGTAGCAGC GCCAGCGGCA
ATAGCTATGA TATGGAAGTG GCTTTTTAAT TCTGAGTTTG GAATAATAAA TCAAATTTTA
AATTTAATAG GGATTAATGG TCCTATGTGG TTATCTGATT CTAAAACGGC CTTAATTTCT
ATTGCTGTAG TAGGTATATG GAGCTGTATA GGATATAACA TGGTACTTTT ATTAGCAGGT
CTTCAAGAAA TTCCAAAAGA TTACTATGAA GCAGCAAATG TTGATGGGGC TGGTCCGATA
AGAACATTTT TTAAGATTAC ATTACCTCTT TTATCGCCAA CGATGTTTTT CGTAGTTGTA
ACAAGTGTAA TAGGTTCACT TCAAGTTTTT GATACTATAT TTATGATGAT AGGTAAAACT
AATGTAGCAA TAGAAGGAAC TCAATCTTTA GTTTATCTTT TCTATAAATA TTCTTTTGTT
GTTAATGATC AAGGATATGG ATCAGCTATT GTTATGCTTT TATTAGCAAT TATAATGGTT
ATTACTTTTA TTCAATTAAA GGTACAAAAG AAATGGGTGC ATTATTAG
|
|---|
| Protein sequence | MNISVKSKEK LKLKRIEKEE LKFNKKNMKE WGWGYVMIAP TIIGLLILNI FPAIKTFILS
FQKTGDFGNN VWTGLSNYKK LLTDEVVISA IGNTFKYAII VVPISIILSL IVAVLLNQNI
KGKSLYRTIY FLPMVAAPAA IAMIWKWLFN SEFGIINQIL NLIGINGPMW LSDSKTALIS
IAVVGIWSCI GYNMVLLLAG LQEIPKDYYE AANVDGAGPI RTFFKITLPL LSPTMFFVVV
TSVIGSLQVF DTIFMMIGKT NVAIEGTQSL VYLFYKYSFV VNDQGYGSAI VMLLLAIIMV
ITFIQLKVQK KWVHY
|
|---|
| |