Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0452 |
Symbol | |
ID | 4206330 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 539783 |
End bp | 540481 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 642565009 |
Product | chain length determinant protein |
Protein accession | YP_697781 |
Protein GI | 110803362 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3944] Capsular polysaccharide biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000687641 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAGAAA ATACTATAAG CTTACAAGAA ATTGCTTATG CTTTAAAGAA GAGATGGAAA CTAATTGCAC TAATAACAAT AGCTGCTACC TTAGTTTCAG CAATATTAAG TTTTTTTGTA ATAAAACCAC AATATGAGGC AAAAACTAAG CTTTTTATTG GTAAGCAAGA AACAAGTCAA AATGCAGCAA ACTATGATAA TAATGATATT ATGATGTATC AAAAACTTAT GAAGACTTAC GCAGAACTTG CAAAAACTTC AGATTTAGTT ACTAAGGCAG TTAAAAATGC TAAATTAGAT TACAATCAGA ATGAAATAAA AGGGGTTTTA AATAATCTTA ATGTTACTCC AAGTGCTGAT ACTCAAATAT TAGATTTAAG CTTTAAGGGA AAAAATCCTA AGGAAGTTTT AAAGGTAACA GAGGCTATAA CAGATGAATT TATTTCAGAA TCCAAGGAGC TTATTCCAAA TGGAAATGTA CAAGTTATAC AAAAACCACA GCTTCCAGAA AATCCAGTAA GTCCAAATAA GAAGCTGAAT ATACTTATTG CTTTTGTTTT AGGTCTTATG ATAGGAGTAG GAATAGTACT TTTACTTGAA TACTTAGATA ATACATTTAA ATCAAGAGAA GAACTGGAAA AAACTTTAGA TTTACCTATA ATAGGGGCTA TTCCAGACTA CGATAGTATA GAAAAATAA
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Protein sequence | MEENTISLQE IAYALKKRWK LIALITIAAT LVSAILSFFV IKPQYEAKTK LFIGKQETSQ NAANYDNNDI MMYQKLMKTY AELAKTSDLV TKAVKNAKLD YNQNEIKGVL NNLNVTPSAD TQILDLSFKG KNPKEVLKVT EAITDEFISE SKELIPNGNV QVIQKPQLPE NPVSPNKKLN ILIAFVLGLM IGVGIVLLLE YLDNTFKSRE ELEKTLDLPI IGAIPDYDSI EK
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