Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0392 |
Symbol | kduD |
ID | 4204548 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 479364 |
End bp | 480140 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 642564949 |
Product | 2-deoxy-D-gluconate 3-dehydrogenase |
Protein accession | YP_697721 |
Protein GI | 110803267 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATATGG AGAAATTTTC TTTAGATTTT TTTAAATTAG ATGGTAAAGT AGCTATAGTA ACTGGTGGAA ATACTGGATT AGGAATGGCT TATGTAGAAG CTCTTGCAAA AGCAGGTGCT GATGTTTTAG TAACGACCTT TGATAACAAT ACTGAAGAAG TAAAAAATAT TGTTGAATCA TTAGGAAGAA AAATTGTATT TGTACAAGGA GATTTAACTA AAAAAGAAAC AAGAGATAAG GTTGTATCAA CTTGTTTAGA AGAGTTTGGT AAAATAGATA TATTAGTAAA TAATGCAGGA ACAATAAGAA GAGCACCATT ACTTGAATAT AAAGATGAAG ATTGGCAAGC TGTAATGGAT ATAAACTTAA ACTCAGTTTA CTATTTATCA CAAGCAGTTG CTAAAGTAAT GGCTAAGCAA GGATATGGTA AGATTATAAA CATAGCATCT ATGTTATCAT TCCAAGGTGG AAAATTTGTT CCTCCATACA CTGCAAGTAA ACATGGAGTT GCAGGAATAA CAAAGGCATT TGCTAATGAA TTAGCAGATT TAAATATACA AGTAAATGCT ATTGCACCTG GATATATAAA AACTGCTAAC ACTGCACCAA TTAGAGCAGA TAAAGCTAGA AACCAAGAAA TTCTTTCAAG AATACCAGCA GGTAGATGGG GAGAAGTTTC AGATTTAATG GGAACAGTTG TATTCTTATC AAGTAAAGCA TCTGATTACT TAAATGGACA CATATTAGCT ATAGACGGTG GGTGGTTAGT GAGATGA
|
Protein sequence | MNMEKFSLDF FKLDGKVAIV TGGNTGLGMA YVEALAKAGA DVLVTTFDNN TEEVKNIVES LGRKIVFVQG DLTKKETRDK VVSTCLEEFG KIDILVNNAG TIRRAPLLEY KDEDWQAVMD INLNSVYYLS QAVAKVMAKQ GYGKIINIAS MLSFQGGKFV PPYTASKHGV AGITKAFANE LADLNIQVNA IAPGYIKTAN TAPIRADKAR NQEILSRIPA GRWGEVSDLM GTVVFLSSKA SDYLNGHILA IDGGWLVR
|
| |