Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0288 |
Symbol | |
ID | 4204894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 345433 |
End bp | 346377 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 642564845 |
Product | transketolase |
Protein accession | YP_697617 |
Protein GI | 110801943 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3958] Transketolase, C-terminal subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000211069 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAAAA AAATAGCAAC TAGAGAAGCA TACGGAAAAG CATTAGCTGC TTTAGCTAAC GAAAATAAGA ACATAGTAGT TTTAGACGCA GACCTTTCAA AATCAACTAA AACTGCTGAT TTCAAAAAAG CATGCCCAGA AAGATTCATA AATATGGGTA TTGCAGAAGG AAATATGATG TCAGTAGCAG CAGGTTTATC AACTTGTGGA AAAATTCCAT TTGCTAGTAC ATTTGCTATG TTTGCTGCTG GAAGAGCATT TGAGCAAATA AGAAACTCAA TATGTTACCC AAGATTAAAT GTAAAAATAT GTGCTACTCA TGCTGGTTTA ACAGTTGGTG AAGATGGAGC ATCACACCAA GCTATAGAAG ATTTATCTTT AATGAGAAGT ATACCAAACA TGACAGTAAT ATGCCCATCA GATGCAGTTG AAACAGAAGC TGCAATAAGA GCTATTGCTG AATACAATGG ACCTTGCTAT GTAAGATTAG GAAGAGCAGG AGTTAATGTA ATAAATGATA GACCAGAGTA CAAGTTTGAA ATTGGAAAAG GTATAGAATT AAAAGAAGGT AATGATGTAA CATTATTTGC AACAGGTATA ATGGTTGATG TAGCTATAGA AGCTGTTGAA GCTTTAGCTA AAGAAGGAAT TAACGCTAGA TTAATAAACA TTCATACTAT TAAACCAATA GATTCAGAGC TTATATTAAA AGCTGCTAAA GAAACTGGAG CAATAGTTAC ATTAGAAGAG CATAATATAA TCGGAGGATT AGGATCAGCT GTAGCTGAGG TTGTTGGAGG AGAATATCCA GTACCAGTAG TTAGAGTTGG TGTTAAAGAT ACATTCGGAG AAAGTGGTAA ACCAGACCAA TTATTAAAGG CTTATGGATT AACTTCAGAA GAAGCAGTTA AGGCTGCTAA GAAAGCAATG AGCTTAAAAA GATAA
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Protein sequence | MAKKIATREA YGKALAALAN ENKNIVVLDA DLSKSTKTAD FKKACPERFI NMGIAEGNMM SVAAGLSTCG KIPFASTFAM FAAGRAFEQI RNSICYPRLN VKICATHAGL TVGEDGASHQ AIEDLSLMRS IPNMTVICPS DAVETEAAIR AIAEYNGPCY VRLGRAGVNV INDRPEYKFE IGKGIELKEG NDVTLFATGI MVDVAIEAVE ALAKEGINAR LINIHTIKPI DSELILKAAK ETGAIVTLEE HNIIGGLGSA VAEVVGGEYP VPVVRVGVKD TFGESGKPDQ LLKAYGLTSE EAVKAAKKAM SLKR
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