Gene CPR_0002 details

Gene Information

• Locus tag: CPR_0002
• Symbol: dnaN
• ID: 4205129
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: +
• Start bp: 1903
• End bp: 3003
• Gene Length: 1101 bp
• Protein Length: 366 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 642564542
• Product: DNA polymerase III subunit beta
• Protein accession: YP_697353
• Protein GI: 110803106
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog)
• TIGRFAM ID: [TIGR00663] DNA polymerase III, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.316057
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGATATTTA CATGTGACAA AAATAAATTA CAAGAATCTA TAGCTATAGC TCAAAAAGCT 
ATAACTGGAA AATCAACAAT GCCTATCTTA GAAGGTCTAT ACATAGAAGC TTCTGAGAAC 
ATAGTAACTA TAATAGGATC AGATAAAGAT GTTAGTATAG AAACTAAATT TGAAGCTGAT 
GTTACTGAAC CAGGAAAGTT AGTAGTTGAT GCTAAAATAT TTGGAGAGAT AATAAGAAAG 
TTACCTAACG ATAAAATTAA AATAGAAACA GTATCAGAAG AAGCTATAAG AATAACTTGT 
CAAAAGTCTG TATTTGATTT ATTACATATG AATGCAGAAG ATTTTCCAAG CTTACCTAAG 
ATAAACGAGA ACATGATATT CTCAATAAAC CAAGGAATTC TTAAAAATAT GATAAAAGGA 
ACTTCTTTTG CCATAGCTCA AGATGAAACT AGACCTATTC TTCAAGGTAT ATTATTCGAA 
ATTAAGGACT CTAAATTAAA CTTAGTAGCT TTAGATGGAT ATAGATTAGC AATAAGAACA 
GAGAATATAG ATACTAACAA TACAATTAAT GCTGTTATAC CAGGAAAGAC ACTTAACGAA 
GTGGCTAAGA TATTAGAAGA TTCAGAGGAG ATAGTCAATA TAACATTTAC TCCAAATCAC 
ATATTATTTA ATATGGGAGA TACGAAAGTT ATTTCTAGAT TACTAGAAGG TGAATTCATA 
AAGTATGATG CCTTATTACC AAAAGAACAT AAGTTACAAA TTGAAGTTGA TAAACAAACT 
CTTCAAAATG GTATTGAAAG AGCATCTCTT ATGGCTAAGG AAGGAAATAG TAACTTAGTT 
AAGTTTGATA TAACTGATGA AAATATAGTA ATCACATCTA ATTCTCAATT AGGAAAAGTT 
AGAGAAGAGG TTACTATCAA ATTGCAAGGA GATGAAATTC AAATTGCATT TAACTCAAAA 
TACTTACTAG ATGTTTTAAA AAATATGGAA GAGGACAAAA TAGAATTAAG AATGACAAGT 
AGCATATCTC CATGTATTAT AAGAAATAAG AACAATGATT TATGTGAATA TTTAGTTCTA 
CCTGTTAGAA TAGCAAGATA A 

 

Protein sequence

MIFTCDKNKL QESIAIAQKA ITGKSTMPIL EGLYIEASEN IVTIIGSDKD VSIETKFEAD 
VTEPGKLVVD AKIFGEIIRK LPNDKIKIET VSEEAIRITC QKSVFDLLHM NAEDFPSLPK 
INENMIFSIN QGILKNMIKG TSFAIAQDET RPILQGILFE IKDSKLNLVA LDGYRLAIRT 
ENIDTNNTIN AVIPGKTLNE VAKILEDSEE IVNITFTPNH ILFNMGDTKV ISRLLEGEFI 
KYDALLPKEH KLQIEVDKQT LQNGIERASL MAKEGNSNLV KFDITDENIV ITSNSQLGKV 
REEVTIKLQG DEIQIAFNSK YLLDVLKNME EDKIELRMTS SISPCIIRNK NNDLCEYLVL 
PVRIAR